Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0152
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 33 0.11
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084... 30 0.59
05_04_0062 + 17607290-17608852 28 2.4
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 28 3.1
08_02_0602 + 19183549-19184919 28 3.1
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 27 4.1
04_01_0122 + 1267048-1267149,1267764-1267855,1268137-1268234,126... 27 4.1
03_06_0765 + 36104604-36105689 27 4.1
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371... 27 5.5
06_03_0649 + 23138442-23138842,23139576-23139849,23139929-231405... 27 5.5
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 27 5.5
10_06_0129 + 11052606-11053211 27 7.2
03_01_0298 + 2318836-2319051,2321238-2323106 27 7.2
01_07_0265 + 42404297-42404479,42404544-42404723,42404811-42405440 27 7.2
12_01_0915 - 8908643-8908756,8909086-8909203,8909570-8909682,891... 26 9.5
08_01_0263 + 2141679-2141835,2142033-2142448 26 9.5
07_03_1509 - 27246721-27247350 26 9.5
05_04_0204 - 19022329-19023990 26 9.5
03_02_0187 - 6248226-6249226,6249296-6250148 26 9.5
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 32.7 bits (71), Expect = 0.11
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 228 GHGQPGRLCSQASAVAQTAGIIAHLSAGIPG 320
G GR S+ + V +T G+++ +S+G+PG
Sbjct: 97 GRAPAGRAASKGAGVGETLGVVSRVSSGVPG 127
>04_04_1536 -
34207425-34207490,34207801-34208268,34208345-34208485,
34208582-34208820,34209950-34210436
Length = 466
Score = 30.3 bits (65), Expect = 0.59
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 40 FLVLLVATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWD 171
FL+LL+ +A AAP ++I Y+ R +++G + A+D
Sbjct: 10 FLLLLIVGAATAAPDMSIISYNAEHGARGLEEGPTEAEARAAYD 53
>05_04_0062 + 17607290-17608852
Length = 520
Score = 28.3 bits (60), Expect = 2.4
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +2
Query: 134 MEKLVP*SHVHGTTSMTLTKASPSSTFKRS*RTWPARAIMQSSISGGPNRRNYRP 298
+EK+ S V G + + AS SS+ RS R+ + M S+ SGGP+ Y P
Sbjct: 29 LEKIRSLSVVSGEVAGWSSSASASSS--RSARSSYYSSSMSSNASGGPHNHRYAP 81
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 201 GDAFVSVIDVVPCT*DYGTSFS 136
G F SV+D VPC DY FS
Sbjct: 107 GTGFYSVVDAVPCRRDYLKMFS 128
>08_02_0602 + 19183549-19184919
Length = 456
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 249 LCSQASAVAQTAGIIAHLSAGIPGDAC 329
+C QA+A + + A L AG+ DAC
Sbjct: 189 MCRQAAAAGASGSVAAALPAGVLDDAC 215
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 256 VKHQRWPKPPELSPIYLPVSPVMPVQP 336
++HQ P PP+ +P ++P V P P
Sbjct: 52 MQHQMAPAPPQFAPHFVPFHAVGPPPP 78
>04_01_0122 +
1267048-1267149,1267764-1267855,1268137-1268234,
1268333-1268488,1268736-1269355,1269480-1269547,
1269848-1270099,1270390-1270525,1271054-1271246,
1271386-1271939
Length = 756
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -3
Query: 346 MXLAAXQASPGIPADRWAIIPAVWATAD 263
+ LAA A G P R AI A WAT D
Sbjct: 236 LGLAAGTAHGGAPRARLAIYKACWATPD 263
>03_06_0765 + 36104604-36105689
Length = 361
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 219 DLEGHGQPGRLCSQASAVAQTAGIIAHLSAGIPGD 323
DL+ G L Q A AQ G ++ GIPG+
Sbjct: 59 DLQADVDRGHLVGQVRAAAQCVGFFQVVNHGIPGE 93
>12_01_1022 -
10435409-10435564,10435950-10436219,10436820-10437125,
10437932-10438057,10439825-10439893,10440443-10440487,
10440717-10440776,10441527-10441589,10442186-10442266,
10442494-10442916
Length = 532
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +1
Query: 262 HQRWPKPPE--LSPIYLPVSPVMPV 330
H R P PP LSP+ LP+ P PV
Sbjct: 461 HPRSPVPPAGALSPLGLPIKPDQPV 485
>06_03_0649 +
23138442-23138842,23139576-23139849,23139929-23140562,
23140771-23140826,23141178-23141282,23141295-23141535,
23142686-23142690
Length = 571
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 274 PKPPELSPIYLPVSP 318
P+PP+ SPI++P SP
Sbjct: 69 PRPPQSSPIFVPDSP 83
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 106 DNEIPRDIDDGKASSVISRAWDYVDDTDK--SIAILNVQEILKDMA 237
+N P D+ +G + +I+R V +TD+ ++ + +I++D+A
Sbjct: 459 ENNTPEDVAEGNLNELINRNMLEVVETDELGRVSTCKMHDIMRDLA 504
>10_06_0129 + 11052606-11053211
Length = 201
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 167 GTTSMTLTKASPSSTFKRS*RTWPARAIMQSSISGGPNRRNYRP 298
G S ++ + SS + A ++++ S GP RR +RP
Sbjct: 82 GAASTAISSGAASSGLSLAGAVASAAEVLEAVASSGPKRRRWRP 125
>03_01_0298 + 2318836-2319051,2321238-2323106
Length = 694
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 142 LFHHQCRVEFHYHCI 98
LF +C EFH+HCI
Sbjct: 89 LFTAECSHEFHFHCI 103
>01_07_0265 + 42404297-42404479,42404544-42404723,42404811-42405440
Length = 330
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 98 NTVIMKFHATLMMEKLVP*SHVHGTTSMTLTKASPSSTFKRS*RTWPAR--AIMQSSISG 271
N +++ M +K P + VHG S+ + + PS+T KR R A A Q G
Sbjct: 129 NMRLIEHRGKSMWDKKPPATAVHGGESLPASTSRPSNTRKRKDREDEAEEAAAAQEEEGG 188
Query: 272 G 274
G
Sbjct: 189 G 189
>12_01_0915 -
8908643-8908756,8909086-8909203,8909570-8909682,
8911138-8911218,8911307-8911357,8912173-8912232,
8913353-8913419,8913509-8913759
Length = 284
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +1
Query: 196 IAILNVQEILKDMASQG--DYAVKH 264
+ I N EILKD +++G DYA+ H
Sbjct: 99 VKIANAYEILKDESTRGQYDYAIAH 123
>08_01_0263 + 2141679-2141835,2142033-2142448
Length = 190
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +3
Query: 219 DLEGHGQPGRLCSQASA---VAQTAGIIAHLSA-GIPGDACXA 335
D +G+G PG +C S+ + T G++++ SA G G A A
Sbjct: 131 DGDGNGTPGGICIDGSSPPTIISTPGVVSYGSAPGSSGSATTA 173
>07_03_1509 - 27246721-27247350
Length = 209
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 244 GDYAVKHQRWPKPPELSPIYLPVSPVMPVQP 336
G+ K R P PP P+ +P SPV+ P
Sbjct: 7 GNGRAKSGRLPLPPATIPVAVPPSPVLGSLP 37
>05_04_0204 - 19022329-19023990
Length = 553
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 174 VVPCT*DYGTSFSIINVAWNFIITVLIDGHRWCSV 70
++ C+ + G +++N +N ++ L D HRW SV
Sbjct: 335 LLECSAELGWDANVVN--YNTVMRKLCDEHRWLSV 367
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +1
Query: 253 AVKHQRWPKPPEL---SPIYLPVSPVMPVQ 333
A K Q WPKP + S +Y P+SP V+
Sbjct: 43 AQKVQVWPKPTSISWPSAVYAPLSPSFSVR 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,790,996
Number of Sequences: 37544
Number of extensions: 212769
Number of successful extensions: 677
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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