Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0152
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53210.1 68418.m06614 basic helix-loop-helix (bHLH) family pr...    29   1.5  
At5g66640.1 68418.m08399 LIM domain-containing protein-related c...    28   2.0  
At3g12200.1 68416.m01521 protein kinase family protein contains ...    28   2.6  
At3g45220.1 68416.m04880 serpin, putative / serine protease inhi...    27   3.5  
At3g23530.1 68416.m02961 cyclopropane fatty acid synthase, putat...    27   3.5  
At3g23510.1 68416.m02960 cyclopropane fatty acid synthase, putat...    27   3.5  
At1g04150.1 68414.m00405 C2 domain-containing protein contains I...    27   3.5  
At5g65850.1 68418.m08287 F-box family protein                          26   8.0  

>At5g53210.1 68418.m06614 basic helix-loop-helix (bHLH) family
           protein contains similarity to helix-loop-helix
           DNA-binding protein
          Length = 294

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +1

Query: 136 GKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYAVKHQRWPKPPELSPIYLPVS 315
           G  +S+I    +Y+ +  + +  L  ++  K  A      V     P PP LSP   P+S
Sbjct: 134 GDQASIIGGVVEYISELQQVLQSLEAKKQRKTYAEVLSPRVVPSPRPSPPVLSPRKPPLS 193

Query: 316 PV 321
           P+
Sbjct: 194 PL 195


>At5g66640.1 68418.m08399 LIM domain-containing protein-related
           contains low similarity to Pfam profile PF00412: LIM
           domain
          Length = 450

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -3

Query: 199 RCFC--QCHRRSPMHVRLRN*LFHHQCRVEFH 110
           RC C   CHR   MH  L+   FH  C  E++
Sbjct: 95  RCLCCFHCHRPFVMHEILKKGKFHIDCYKEYY 126


>At3g12200.1 68416.m01521 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 571

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 289 LSPIYLPVSPVMPV 330
           LSPIYLPV P+ PV
Sbjct: 283 LSPIYLPVFPIKPV 296


>At3g45220.1 68416.m04880 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 393

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 145 SSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYAVKH 264
           S+V  +A   VD+     A ++V  + KDM   GD+   H
Sbjct: 328 SNVFHKACIEVDEEGTEAAAVSVASMTKDMLLMGDFVADH 367


>At3g23530.1 68416.m02961 cyclopropane fatty acid synthase, putative
           / CPA-FA synthase, putative similar to cyclopropane
           synthase [Sterculia foetida] GI:21069167; contains Pfam
           profiles PF02353: Cyclopropane-fatty-acyl-phospholipid
           synthase, PF01593: amine oxidase, flavin-containing
          Length = 867

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 100 YSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGD 249
           YSD  +  DID    +     AW+++  T+K + +     IL+++    +
Sbjct: 297 YSDIYLHHDIDLMPRNQAAWSAWNFLGSTEKKVCVTYWLNILQNLGENSE 346


>At3g23510.1 68416.m02960 cyclopropane fatty acid synthase, putative
           / CPA-FA synthase, putative similar to cyclopropane
           synthase [Sterculia foetida] GI:21069167; contains Pfam
           profile PF02353: Cyclopropane-fatty-acyl-phospholipid
           synthase
          Length = 867

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 100 YSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGD 249
           YSD  +  DID    +     AW+++  T+K + +     IL+++    +
Sbjct: 297 YSDIYLHHDIDLMPRNKAAWSAWNFLGSTEKKVCVTYWLNILQNLGENSE 346


>At1g04150.1 68414.m00405 C2 domain-containing protein contains
            INTERPRO:IPR000008 C2 domain
          Length = 1012

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +1

Query: 100  YSDNEIPRDIDDGKASSVISRAWDYVD---DTDKSIAILNVQEILKDMASQGDYAVKHQR 270
            +++   P ++D+   +   SR +D V    D  +SIA   VQ ++ DMASQG+       
Sbjct: 888  HAETVFPDELDEEFDTFPTSRGFDVVRMRYDRVRSIAG-RVQTVVGDMASQGERVQALLS 946

Query: 271  WPKP 282
            W  P
Sbjct: 947  WRDP 950


>At5g65850.1 68418.m08287 F-box family protein
          Length = 392

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 133 DGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQGDYAV 258
           +GK +S++S  + +VD   KSI +  +Q+  K   S+  Y +
Sbjct: 271 NGKLASLVSERYCFVDGRSKSIELWVLQDAEKKEWSKHTYVL 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,227,701
Number of Sequences: 28952
Number of extensions: 154739
Number of successful extensions: 561
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)