Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0149
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8YZF0 Cluster: Type I site-specific deoxyribonuclease;...    32   8.9  
UniRef50_Q7RM68 Cluster: Var1p, putative; n=3; Plasmodium (Vinck...    32   8.9  

>UniRef50_Q8YZF0 Cluster: Type I site-specific deoxyribonuclease;
           n=8; cellular organisms|Rep: Type I site-specific
           deoxyribonuclease - Anabaena sp. (strain PCC 7120)
          Length = 669

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 331 QPQEKVCSTTKDVFWDRSKIRLLLKLCLEDRFKTK*TKNIMAD 459
           +PQEK+ +  +D FW + +I  + +LCLE+  +      ++AD
Sbjct: 573 EPQEKLETVFQD-FWTQERIEAIEQLCLEENLQVTTVNQMIAD 614


>UniRef50_Q7RM68 Cluster: Var1p, putative; n=3; Plasmodium
           (Vinckeia)|Rep: Var1p, putative - Plasmodium yoelii
           yoelii
          Length = 397

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 17  EYPCNYVYKVFILNTILLFFRTLSCKYL*LFRYFSLKMD 133
           +Y  NY  ++FI+NT+  FF T+S   +   +YF  +++
Sbjct: 244 QYEDNYTKELFIINTLKYFFSTISNSIIQNIKYFEKEIE 282


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 523,621,114
Number of Sequences: 1657284
Number of extensions: 9492444
Number of successful extensions: 21543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21534
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)