Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0148
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    72   5e-14
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    34   0.016
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    27   1.4  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   1.8  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    27   2.4  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    27   2.4  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   3.2  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.2  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    26   4.2  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   5.6  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   7.3  

>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 72.1 bits (169), Expect = 5e-14
 Identities = 28/50 (56%), Positives = 37/50 (74%)
 Frame = +1

Query: 256 CQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405
           CQFAHG +EL+   RHPKYK+E CR+F   G+CPYG RC F+H+   A++
Sbjct: 347 CQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPYGLRCCFLHDESNAQK 396



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEEAR 402
           YKTE C+ +   G C YG +C F H  +E +
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAHGNQELK 357



 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 197 YKTXLCRPFEEAGVCKYG 250
           YKT  C+ ++ +G C+YG
Sbjct: 327 YKTEPCKNWQISGTCRYG 344


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 33.9 bits (74), Expect = 0.016
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEE 396
           Y+ ++C+ +   G+C YG  C F+H  E+
Sbjct: 185 YQPDVCKDYKLTGYCGYGDTCKFLHMRED 213



 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 197 YKTXLCRPFEEAGVCKYGDNANLLTASANY 286
           Y+  +C+ ++  G C YGD    L    +Y
Sbjct: 185 YQPDVCKDYKLTGYCGYGDTCKFLHMREDY 214


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 292 LQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 384
           L   P  +  +C  ++++GFCP GP C   H
Sbjct: 100 LHLDPSKQVGVC-AWYNMGFCPLGPICRGKH 129



 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 346 GFCPYGPRCHFVH 384
           GFCP GP C   H
Sbjct: 142 GFCPLGPNCPDAH 154


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 268 HGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEAR 402
           +GV  ++NLQ  P      C+ F + G C  G  C F H+ E  R
Sbjct: 34  NGVSTVKNLQHVP------CKFFRN-GTCTAGENCPFSHSLETER 71


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +1

Query: 301 HPKYKTELCRTFHSVGFCPYGPRCHFVHNAE 393
           H K    LC        CPY   C F H+ E
Sbjct: 40  HVKENNALCPAISIGNECPYKENCKFPHDVE 70


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 325 CRTFHSVGFCPYGPRCHFVH 384
           CR +++ G C  G  C FVH
Sbjct: 209 CRYYNANGICGKGAACRFVH 228


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 547 WWRHPKWRLRRKWECGEAWRSRPVAN 470
           WW  P+ ++RR +     WR   + N
Sbjct: 563 WWLSPELQMRRPYSMAHKWRIDRILN 588


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 8    GAIGPIGANSVSSGLSWEQHPVLSRASSVPAHRAL 112
            G I  +  +  +S L WE+HP+  R S++  H  +
Sbjct: 1329 GCIAMVFTDIKNSTLLWERHPIAMR-SAIKTHNTI 1362


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 233 PLLQTVGRARSCSDLWLVAEEPVH 162
           PL +T+G A S + +WL+ EE ++
Sbjct: 103 PLFKTMGTADSQNRMWLLPEETLY 126


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -2

Query: 499 EAWRSRPVANIDAIDPP--DETMP 434
           E WR  P AN++ +D P  D+++P
Sbjct: 188 ELWRKDPNANLEDLDKPIEDDSLP 211


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +2

Query: 401 DAENHRRQEVHW-HRLIG 451
           DAENHRR  VHW  +L+G
Sbjct: 286 DAENHRR-NVHWITKLLG 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,976
Number of Sequences: 5004
Number of extensions: 41639
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)