Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0148
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)              107   4e-24
SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)               43   2e-04
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)                 34   0.088
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.20 
SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.47 
SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_6496| Best HMM Match : Collagen (HMM E-Value=0)                     29   1.9  
SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018)                 29   2.5  
SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)                 29   3.3  
SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05)           28   4.4  
SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)          28   4.4  
SB_38614| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_24759| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.59)            28   5.8  
SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039)                 27   7.6  
SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   7.6  

>SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)
          Length = 527

 Score =  107 bits (258), Expect = 4e-24
 Identities = 42/55 (76%), Positives = 47/55 (85%)
 Frame = +1

Query: 256 CQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEARRREPSS 420
           CQFAHG  ELR L RHPKYKTELCRTFH++GFCPYGPRCHF+HNA+E R   P+S
Sbjct: 175 CQFAHGYHELRQLARHPKYKTELCRTFHTIGFCPYGPRCHFIHNADEKRAPPPNS 229



 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 19/40 (47%), Positives = 22/40 (55%)
 Frame = +1

Query: 286 RNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNAEEARR 405
           R  Q   +YKTELCR F   G C YG +C F H   E R+
Sbjct: 147 RGSQNSSRYKTELCRPFEESGTCKYGDKCQFAHGYHELRQ 186



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +2

Query: 197 YKTXLCRPFEEAGVCKYGD 253
           YKT LCRPFEE+G CKYGD
Sbjct: 155 YKTELCRPFEESGTCKYGD 173



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 197 YKTXLCRPFEEAGVCKYGDNANLL 268
           YKT LCR F   G C YG   + +
Sbjct: 193 YKTELCRTFHTIGFCPYGPRCHFI 216


>SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)
          Length = 505

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 313 KTELCRTFHSVGFCPYGPRCHFVHNAEEARRREPSSPGGSLASSH 447
           K  LCR F + G+C YG +C FVH  + +  +   +PGG ++  H
Sbjct: 14  KPTLCRYFSANGYCFYGDQCQFVHAKQTSNDQARPAPGGPVSPLH 58


>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
          Length = 321

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 310 YKTELCRTFHSVGFCPYGPRCHFVHNAEE 396
           Y+ ++C+ +   GFC +G  C F+H+  +
Sbjct: 179 YQPDICKDYKETGFCGFGDSCKFLHDRSD 207



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 197 YKTXLCRPFEEAGVCKYGDNANLLTASANY 286
           Y+  +C+ ++E G C +GD+   L   ++Y
Sbjct: 179 YQPDICKDYKETGFCGFGDSCKFLHDRSDY 208


>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -2

Query: 544 WRHP-KWRLRRKWECGEAWRSR 482
           WRH  KWR RRKW     WR R
Sbjct: 104 WRHRRKWRQRRKWRQRRKWRQR 125



 Score = 31.1 bits (67), Expect = 0.62
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 547 WWRHPKWRLRRKWECGEAWRSR 482
           W +  KWR RRKW     WR R
Sbjct: 186 WRQRRKWRQRRKWRQRRKWRQR 207



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 547 WWRHPKWRLRRKWECGEAWR 488
           W +  KWR RRKW   + WR
Sbjct: 110 WRQRRKWRQRRKWRQRKKWR 129



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 547 WWRHPKWRLRRKWECGEAWR 488
           W +  KWR RRKW     WR
Sbjct: 192 WRQRRKWRQRRKWRQRRKWR 211



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 532 KWRLRRKWECGEAWRSR 482
           KWR RRKW     WR R
Sbjct: 185 KWRQRRKWRQRRKWRQR 201



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 532 KWRLRRKWECGEAWRSR 482
           KWR RRKW     WR R
Sbjct: 103 KWRHRRKWRQRRKWRQR 119


>SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 307 KYKTELCRTFHSVGFCPYGPRCHFVHNAEEARRREPSSPGGSLASSH 447
           K K  +C  F   G C +G +C FVHN         + P    A+ H
Sbjct: 105 KGKKRVCWKFQK-GKCRFGEKCKFVHNTIPVGATSANEPDSETAAPH 150


>SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +1

Query: 325 CRTFHSVGFCPYGPRCHFVHNAEEARRREPSSPGGSLASSHRADLWRLY*RRVAIATLRR 504
           C   H + F   G R  F+ N  E   +   SP  +  S      W+LY +      LRR
Sbjct: 148 CILVHHMMFNKRGERGRFLGNMREQLEQTFPSPEQAFTSYLEDTTWKLYKKHCIDDVLRR 207

Query: 505 IPIYASISTWD 537
           +     ++T+D
Sbjct: 208 LKKKPRVATFD 218


>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1234

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 534 PSGD*GVNGNAAKRGDRDPS 475
           P GD G NG+  KRG+R P+
Sbjct: 668 PQGDIGANGDRGKRGERGPN 687


>SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018)
          Length = 541

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 301 HPKYKTELCRTFHSVGFCPYGPRCHFVH 384
           HP +    CRTF +   CPYG  C FVH
Sbjct: 444 HPTFP---CRTFPN---CPYGKSCMFVH 465


>SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)
          Length = 508

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 313 KTELCRTFHSVGFCPYGPRCHFVH 384
           + ++CR +   G C +G +C FVH
Sbjct: 39  RQKVCRFYAKKGNCRFGEKCRFVH 62


>SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05)
          Length = 720

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 268 HGVRELRNLQRH--PKYKTELCRTFHSVGFCPYGPRCHFVHNAEEARRREPSS 420
           +G+  +R LQ++  PKY  +LCR   +V F P   R       ++ R R  S+
Sbjct: 56  NGIIRVRVLQQNEQPKYGVDLCRKSSAVHFAPTAYRGLMEKMKQKQRERSRSN 108


>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
          Length = 724

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 156 PPVNRLLRHQPQVATRP--XSADRLKKRGFVN 245
           PP  RLL H P+++ RP   S+  L+K G +N
Sbjct: 454 PPFERLLEHLPRLSPRPYSISSSPLEKPGQLN 485


>SB_38614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 532 KWRLRRKWECGEAWRSRPVANIDAIDPPDETMPMNLLATMVL 407
           ++R+R   ECGE   S+PV+   AID  + + P   +    L
Sbjct: 40  EFRVRAVTECGEGRYSKPVSADTAIDGKEHSDPKTYIGEEAL 81


>SB_24759| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.59)
          Length = 262

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 239 CKYGDNANLLTASANYAIFSVILNTRRSCVALSIRL-ASVLMDRVAISCITQRKQDAENH 415
           C YG +   +T        +V++ T ++CV++S+ L AS+L+ +   SC    +    N+
Sbjct: 194 CSYGHDTVTVTIQERSGSGTVMIVTIQTCVSISLTLNASLLLSQ---SCFVNGRHFCYNN 250

Query: 416 RRQ 424
           + Q
Sbjct: 251 QTQ 253


>SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039)
          Length = 485

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 343 VGFCPYGPRCHFVHNAEEARRR 408
           +G C +GPRC F H   +  +R
Sbjct: 198 LGRCTFGPRCRFYHPDRDPTKR 219


>SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 869

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -2

Query: 484 RPVANIDAIDPPDETMPMNLLATMVLCVLLPLRYARNGNAVHKDRSQPN 338
           RPV + D +  P ET+ +  L T    +   + Y  +   +H+D +  N
Sbjct: 498 RPVKDYDDVMEPAETLTLLNLMTFCYQIAKGMEYLASRKCIHRDLAARN 546


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,831,310
Number of Sequences: 59808
Number of extensions: 358966
Number of successful extensions: 1050
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)