Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0143
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    32   0.042

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 32.3 bits (70), Expect = 0.042
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = -1

Query: 439 DTYYXVRSFSXCPXNGSSIXNYWGIYXLIXFIYSPFHXIPYXLKIQFXPIFIGVNXXFXP 260
           DTY+ V  F      G+ +    G Y     ++   +       IQF  +FIGVN  F P
Sbjct: 376 DTYFVVAHFHYVLSMGA-LFGLCGAYYWSPKMFGLMYN-ETLASIQFWILFIGVNIVFGP 433

Query: 259 QHF 251
           QHF
Sbjct: 434 QHF 436



 Score = 29.1 bits (62), Expect = 0.39
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 254 FLGLAGIPRRYSDYPD 207
           FLGL G+PRR  DYP+
Sbjct: 436 FLGLNGMPRRIPDYPE 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,795
Number of Sequences: 5004
Number of extensions: 20371
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)