Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0143
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 38 0.005
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.032
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.032
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.032
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.032
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.032
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 27 6.5
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 37.9 bits (84), Expect = 0.005
Identities = 24/63 (38%), Positives = 28/63 (44%)
Frame = -1
Query: 439 DTYYXVRSFSXCPXNGSSIXNYWGIYXLIXFIYSPFHXIPYXLKIQFXPIFIGVNXXFXP 260
DTYY V F G+ + G Y I + Y KI F +FIGVN F P
Sbjct: 73 DTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYG-KIHFWIMFIGVNITFFP 131
Query: 259 QHF 251
QHF
Sbjct: 132 QHF 134
Score = 35.9 bits (79), Expect = 0.019
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = -3
Query: 266 FXTTFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIXXQ-RINLF 90
F FLGLAG PRRYSD+ D + + +
Sbjct: 130 FPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGW 189
Query: 89 PXNLPS---SIE*YQNLPPAEHSYNELP 15
N S S+E Q PPA H+YNELP
Sbjct: 190 VENTGSSWPSLEWVQQSPPALHTYNELP 217
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 35.9 bits (79), Expect = 0.019
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = -3
Query: 266 FXTTFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIXXQ-RINLF 90
F FLGLAG PRRYSD+ D + + +
Sbjct: 44 FPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGW 103
Query: 89 PXNLPS---SIE*YQNLPPAEHSYNELP 15
N S S+E Q PPA H+YNELP
Sbjct: 104 VENTGSSWPSLEWVQQSPPALHTYNELP 131
Score = 31.1 bits (67), Expect = 0.53
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -1
Query: 310 KIQFXPIFIGVNXXFXPQHF 251
KI F +FIGVN F PQHF
Sbjct: 29 KIHFWIMFIGVNITFFPQHF 48
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.1 bits (77), Expect = 0.032
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = -3
Query: 254 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIXXQ-RINLFPXNL 78
FLGLAG PRRYSD+ D + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 77 PS---SIE*YQNLPPAEHSYNELP 15
S S+E Q PPA H+YNELP
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELP 85
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.1 bits (77), Expect = 0.032
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = -3
Query: 254 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIXXQ-RINLFPXNL 78
FLGLAG PRRYSD+ D + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 77 PS---SIE*YQNLPPAEHSYNELP 15
S S+E Q PPA H+YNELP
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELP 85
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.1 bits (77), Expect = 0.032
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = -3
Query: 254 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIXXQ-RINLFPXNL 78
FLGLAG PRRYSD+ D + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 77 PS---SIE*YQNLPPAEHSYNELP 15
S S+E Q PPA H+YNELP
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELP 85
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.1 bits (77), Expect = 0.032
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = -3
Query: 254 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIXXQ-RINLFPXNL 78
FLGLAG PRRYSD+ D + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 77 PS---SIE*YQNLPPAEHSYNELP 15
S S+E Q PPA H+YNELP
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELP 85
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 35.1 bits (77), Expect = 0.032
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = -3
Query: 254 FLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIXXQ-RINLFPXNL 78
FLGLAG PRRYSD+ D + + + N
Sbjct: 2 FLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVENT 61
Query: 77 PS---SIE*YQNLPPAEHSYNELP 15
S S+E Q PPA H+YNELP
Sbjct: 62 GSSWPSLEWVQQSPPALHTYNELP 85
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -3
Query: 254 FLGLAGIPRRYSDYPD 207
FLGLAG PRRYSD+ D
Sbjct: 2 FLGLAGFPRRYSDFAD 17
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 88 LXISHHQLNDIKIYHQQNIHIMNY 17
+ I+HHQ + I I H Q+ I+NY
Sbjct: 294 IIINHHQSSSIIINHHQSSSIINY 317
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,780,177
Number of Sequences: 59808
Number of extensions: 120882
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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