Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0143
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical ...    27   5.7  
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    27   5.7  

>AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical
           protein C46E10.2 protein.
          Length = 123

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -3

Query: 299 FXNIYWSKYXIFXTTF 252
           F NIYWS Y IF  TF
Sbjct: 11  FFNIYWSFYAIFGFTF 26


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 430 YXVRSFSXCPXNGSSIXNYWGIYXLIXFIYSPFHXIPYXLKIQFXPIFIGVN 275
           + +RSF   P     I  ++ I+      +S F+  P   +I F PIF+  N
Sbjct: 365 FFLRSFEKTPIFWEKIYPFFRIFRF----FSNFYTFPVVFEIDFLPIFLVAN 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,756,837
Number of Sequences: 27780
Number of extensions: 104428
Number of successful extensions: 168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)