Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0140
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    33   0.13 
10_08_0419 - 17783202-17784938                                         31   0.94 
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771...    30   1.6  
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084...    27   8.8  

>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 205 SEEDWHKTRNSF*SIGTRSPGRGELYNGYSGREHRTSHPLEAAADRR 345
           S ++W   R SF     R  GRG ++  Y GR+ R   P    A RR
Sbjct: 120 SMQEWSSERCSFVQEALRGSGRGHIWAFYRGRQRRLGPPPPLPARRR 166


>10_08_0419 - 17783202-17784938
          Length = 578

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 266 DAANSIMGIVVENIEPHIHWKPQLIDGILKYGDRVHTMSLPRASAPPGLRPNEIIDQFHV 445
           DA + I G+   N+EP +     LID   + G     M++  A A  G+ PN       +
Sbjct: 352 DANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLI 411

Query: 446 TNFN 457
           T F+
Sbjct: 412 TGFS 415


>03_05_0586 -
           25875703-25876332,25876426-25876713,25877064-25877194,
           25877299-25877812
          Length = 520

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 12/57 (21%)
 Frame = +2

Query: 173 HGPHQPRPSFGQRKTG------------TRRGILFRASERDHQDAANSIMGIVVENI 307
           HGPH P P FG+   G             R G L+ A  R   D A   + + V NI
Sbjct: 253 HGPHWPLPPFGESSRGPFNILEQRPRFANRHGRLYEADARSFHDLAEHDIRVAVVNI 309


>04_04_1536 -
           34207425-34207490,34207801-34208268,34208345-34208485,
           34208582-34208820,34209950-34210436
          Length = 466

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 403 RSRSSGQRHRVDPVSVLEDSVD 338
           RSR++G+R+R D V  L +SVD
Sbjct: 125 RSRAAGERYRHDGVEELPESVD 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,719,862
Number of Sequences: 37544
Number of extensions: 252712
Number of successful extensions: 868
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)