Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0140
         (608 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2559|AAF57791.1|  649|Drosophila melanogaster CG18635-P...    35   0.100
DQ398892-1|ABD61608.1| 2043|Drosophila melanogaster Dicer-1 prot...    28   8.7  
DQ398891-1|ABD61607.1| 2043|Drosophila melanogaster Dicer-1 prot...    28   8.7  
DQ398889-1|ABD61605.1| 2043|Drosophila melanogaster Dicer-1 prot...    28   8.7  
DQ398888-1|ABD61604.1| 2043|Drosophila melanogaster Dicer-1 prot...    28   8.7  
DQ398887-1|ABD61603.1| 2043|Drosophila melanogaster Dicer-1 prot...    28   8.7  
DQ398886-1|ABD61602.1| 2043|Drosophila melanogaster Dicer-1 prot...    28   8.7  
DQ398885-1|ABD61601.1| 2043|Drosophila melanogaster Dicer-1 prot...    28   8.7  
AE014297-3226|AAF56056.1| 2249|Drosophila melanogaster CG4792-PA...    28   8.7  

>AE013599-2559|AAF57791.1|  649|Drosophila melanogaster CG18635-PA
           protein.
          Length = 649

 Score = 34.7 bits (76), Expect = 0.100
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +2

Query: 305 IEPHIHWKPQLIDGILKYGD-RVHTMSLPRASAPPGLRPNEIIDQFHVTNFNVXLEIXSE 481
           I+ ++   P+L+ G LK  D   HT+ +P++  P  L P +++D +      +   I  +
Sbjct: 418 IKENVPHPPKLLIGRLKDEDPEEHTVLIPQSPKPSPLTPKDVVDFYFPRPTKIVNGIQQD 477

Query: 482 XWTGRTESW 508
            + GRT S+
Sbjct: 478 DFAGRTVSF 486


>DQ398892-1|ABD61608.1| 2043|Drosophila melanogaster Dicer-1
           protein.
          Length = 2043

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 185 QPRPSFGQR--KTGTRRGILFRASERDHQDAANSIMGIVVEN 304
           +P+PS G    +  TRR +  R   RDH D ++++  ++  N
Sbjct: 402 KPKPSSGANTAQPRTRRRVYTRRHHRDHNDGSDTLCALIYCN 443


>DQ398891-1|ABD61607.1| 2043|Drosophila melanogaster Dicer-1
           protein.
          Length = 2043

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 185 QPRPSFGQR--KTGTRRGILFRASERDHQDAANSIMGIVVEN 304
           +P+PS G    +  TRR +  R   RDH D ++++  ++  N
Sbjct: 402 KPKPSSGANTAQPRTRRRVYTRRHHRDHNDGSDTLCALIYCN 443


>DQ398889-1|ABD61605.1| 2043|Drosophila melanogaster Dicer-1
           protein.
          Length = 2043

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 185 QPRPSFGQR--KTGTRRGILFRASERDHQDAANSIMGIVVEN 304
           +P+PS G    +  TRR +  R   RDH D ++++  ++  N
Sbjct: 402 KPKPSSGANTAQPRTRRRVYTRRHHRDHNDGSDTLCALIYCN 443


>DQ398888-1|ABD61604.1| 2043|Drosophila melanogaster Dicer-1
           protein.
          Length = 2043

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 185 QPRPSFGQR--KTGTRRGILFRASERDHQDAANSIMGIVVEN 304
           +P+PS G    +  TRR +  R   RDH D ++++  ++  N
Sbjct: 402 KPKPSSGANTAQPRTRRRVYTRRHHRDHNDGSDTLCALIYCN 443


>DQ398887-1|ABD61603.1| 2043|Drosophila melanogaster Dicer-1
           protein.
          Length = 2043

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 185 QPRPSFGQR--KTGTRRGILFRASERDHQDAANSIMGIVVEN 304
           +P+PS G    +  TRR +  R   RDH D ++++  ++  N
Sbjct: 402 KPKPSSGANTAQPRTRRRVYTRRHHRDHNDGSDTLCALIYCN 443


>DQ398886-1|ABD61602.1| 2043|Drosophila melanogaster Dicer-1
           protein.
          Length = 2043

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 185 QPRPSFGQR--KTGTRRGILFRASERDHQDAANSIMGIVVEN 304
           +P+PS G    +  TRR +  R   RDH D ++++  ++  N
Sbjct: 402 KPKPSSGANTAQPRTRRRVYTRRHHRDHNDGSDTLCALIYCN 443


>DQ398885-1|ABD61601.1| 2043|Drosophila melanogaster Dicer-1
           protein.
          Length = 2043

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 185 QPRPSFGQR--KTGTRRGILFRASERDHQDAANSIMGIVVEN 304
           +P+PS G    +  TRR +  R   RDH D ++++  ++  N
Sbjct: 402 KPKPSSGANTAQPRTRRRVYTRRHHRDHNDGSDTLCALIYCN 443


>AE014297-3226|AAF56056.1| 2249|Drosophila melanogaster CG4792-PA
           protein.
          Length = 2249

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 185 QPRPSFGQR--KTGTRRGILFRASERDHQDAANSIMGIVVEN 304
           +P+PS G    +  TRR +  R   RDH D ++++  ++  N
Sbjct: 459 KPKPSSGANTAQPRTRRRVYTRRHHRDHNDGSDTLCALIYCN 500


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,221,603
Number of Sequences: 53049
Number of extensions: 398713
Number of successful extensions: 1219
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)