Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0140
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 265 GRGELYNGYSGREHRTSHPL 324
           GRG ++ G+  RE  + +PL
Sbjct: 53  GRGTIFEGHDDREQPSVYPL 72


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 308 EPHIHWKPQLIDGI 349
           + H+ WKP   DGI
Sbjct: 101 DSHLSWKPSDFDGI 114


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 562 LPKKSIDGSLQVKXGTCF 509
           LPK S   S+ V  GTCF
Sbjct: 274 LPKISYVKSIDVYLGTCF 291


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 562 LPKKSIDGSLQVKXGTCF 509
           LPK S   S+ V  GTCF
Sbjct: 274 LPKISYVKSIDVYLGTCF 291


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 562 LPKKSIDGSLQVKXGTCF 509
           LPK S   S+ V  GTCF
Sbjct: 213 LPKISYVKSIDVYLGTCF 230


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 439 ELVDNLVGA*SWRSRSSGQRHRVDPVSV 356
           E++DN++G    R R SG+     P  V
Sbjct: 34  EVLDNILGGYDARIRPSGENATDGPAVV 61


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 439 ELVDNLVGA*SWRSRSSGQRHRVDPVSV 356
           E++DN++G    R R SG+     P  V
Sbjct: 34  EVLDNILGGYDARIRPSGENATDGPAIV 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,026
Number of Sequences: 438
Number of extensions: 2832
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)