Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0139
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 31 0.097
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 31 0.13
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.29
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 29 0.52
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 29 0.68
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 28 0.90
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 28 1.2
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 27 2.7
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 26 4.8
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 26 4.8
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 25 8.4
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 8.4
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 8.4
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 8.4
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 31.5 bits (68), Expect = 0.097
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 207 VQEILKDMASQGDYASKHQRWPKPPELSPIYLPVSPVMP 323
+Q IL+ +A +GD + PKPP + I P+ P P
Sbjct: 358 LQSILRSLAIEGDDDEVAKVLPKPPSVPTIQAPIPPEAP 396
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.1 bits (67), Expect = 0.13
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 270 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 413
P P ++P V P +PV P T++ + P ++P +VP S
Sbjct: 221 PPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQS 268
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.9 bits (64), Expect = 0.29
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 90 NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYASKHQ 263
NQ S D+D+ ASS++S A D+D N+ +A GD +S+H+
Sbjct: 3 NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQHE 61
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 29.1 bits (62), Expect = 0.52
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 210 QEILKDMASQGDYASKHQRWPKPPELSPIYLPVSPVMPVQP-LTSLTLTQTASGPETSPA 386
++I K++A+ WP PP + L V+ QP ++ + T S T P+
Sbjct: 405 RDIAKNVATWLKNGENFSSWPLPPLMDLASLSVAEPRDSQPSVSQVNDTFVKSSDSTFPS 464
Query: 387 SDNLSVPS 410
S ++ PS
Sbjct: 465 SQSMQSPS 472
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 28.7 bits (61), Expect = 0.68
Identities = 24/85 (28%), Positives = 37/85 (43%)
Frame = +3
Query: 159 AWDYVDDTDKSIAILNVQEILKDMASQGDYASKHQRWPKPPELSPIYLPVSPVMPVQPLT 338
A++ DT + LN E + M +QG S SP + +PV P QPL
Sbjct: 242 AYEVTGDTRAASPTLNPFEQMMAMTNQGMSVSPGVETTS----SPFF--TAPVEPNQPLQ 295
Query: 339 SLTLTQTASGPETSPASDNLSVPSS 413
L + T P + + L++PS+
Sbjct: 296 PLRPSMTGPVPSSMGSEATLNMPST 320
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 28.3 bits (60), Expect = 0.90
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 278 RFGPPLMLTCIIALAGHVLQDLLNVEDGDAFVSVIDVVP 162
RFGPPLM T + L G V+ +++ G S+ID P
Sbjct: 286 RFGPPLMKTTSVVL-GLVVGMIISAATGYWDHSIIDAAP 323
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 249 ASKHQRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 389
A KH P PP P+ +SP MP PLT S T S PE+ P S
Sbjct: 739 AVKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 96 YSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAIL-NVQEILKDMASQGDYASKHQRWP 272
Y+D+E P D + K S+++ +A+ +V + + L N I + + G + R+P
Sbjct: 158 YTDSEAPNDSEKQKNSTLLPKAYLFVPGLENIRSYLPNRHWIESNAITTGKAVEELPRFP 217
Query: 273 KPPE 284
P+
Sbjct: 218 DDPK 221
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 243 DYASKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVP 407
DY+ ++P + SP+ + + +P S + QTA +S SD S P
Sbjct: 152 DYSKVSGKYPSVIDNSPVKSKLGALPSARPRLSYSAAQTAPISLSSEGSDYFSRP 206
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +3
Query: 168 YVDDTDKSIAILNVQEILKDMASQGDYASKHQRWPKPPELSPIYLPVS 311
+V D ++ +L+ I K KH P PP S LP+S
Sbjct: 114 FVQKLDSTLRVLDYNAINKFSIDLTPVQRKHVDMPPPPVFSQTSLPMS 161
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 243 DYASKHQRWPKPPELSPIYLPVSPV 317
+Y++ P+PP+L+P++L V V
Sbjct: 107 EYSTIEYTLPRPPQLTPVFLFVVDV 131
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +3
Query: 267 WPKPPELS-PIY-----LPVSPVMPVQPLTSLTLTQTASGPETSP 383
+P P +S P Y +PVSP +PV P +S + P + P
Sbjct: 287 YPHPTGISLPFYPFDSGIPVSPNIPVSPSSSFVPMYPTTFPSSKP 331
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 493 GWS-DRVSELTRVDDELIDKIQVLSHVSE 410
G+S DR+ ELTR+D ++K+ L S+
Sbjct: 901 GYSVDRIWELTRIDKWFLEKLMGLIRTSQ 929
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -2
Query: 330 AAQASPGIPADRWAIIPAVWATADAYLHNRPGWPCPSR 217
A P + D++A P + + A ++ WP PSR
Sbjct: 110 AKYIDPAVYYDKYARSPYIMSPFVACVNTLSAWPAPSR 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,499
Number of Sequences: 5004
Number of extensions: 47174
Number of successful extensions: 189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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