Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0135
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    62   5e-11
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    26   4.8  
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc...    25   6.3  
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    25   8.4  

>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 24/38 (63%), Positives = 33/38 (86%)
 Frame = +1

Query: 124 ILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDY 237
           +LDDL +RFI+NLPAE++ ++ R+CFQIE AHWFY D+
Sbjct: 11  VLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDF 48



 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 26/75 (34%), Positives = 41/75 (54%)
 Frame = +3

Query: 273 GIREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQSYWT 452
           G+R F+A +F H P L +     +   D++  YK  +P  GAI         +LV+ +  
Sbjct: 60  GLRVFSAKLFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKA 119

Query: 453 KASWGFPKGKVNEDE 497
            + WGFPKGK+++DE
Sbjct: 120 SSGWGFPKGKIDKDE 134



 Score = 35.5 bits (78), Expect = 0.006
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +2

Query: 503 LECATREVLEETGFDISNLINKN 571
           ++CA REV EETGFD S+ IN N
Sbjct: 137 VDCAIREVYEETGFDCSSRINPN 159


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 500 ALECATREVLEETGFDISNLINK 568
           +LE   R++ +  GFD +N++NK
Sbjct: 446 SLEVIPRQLCDNAGFDSTNILNK 468


>SPCC338.04 |cid2||caffeine induced death protein
           Cid2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 435 VQSYWTKASWGFPKGKVNEDEE 500
           +Q     A W +P+GKV+E +E
Sbjct: 29  IQLSLNSAKWEYPEGKVHETQE 50


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 311 DMLENMCCKLSNTTGVYF 258
           DML   CC   N  G+YF
Sbjct: 129 DMLNTDCCVFYNNHGIYF 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,354
Number of Sequences: 5004
Number of extensions: 50716
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)