Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0135
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38603| Best HMM Match : TPR_1 (HMM E-Value=2e-20)                   33   0.23 
SB_54462| Best HMM Match : TPR_1 (HMM E-Value=3.9e-32)                 30   1.6  
SB_44702| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.03)           29   2.2  
SB_23418| Best HMM Match : NAD_binding_1 (HMM E-Value=1.2e-16)         29   2.9  
SB_1148| Best HMM Match : TPR_1 (HMM E-Value=0)                        29   3.8  
SB_28422| Best HMM Match : TerC (HMM E-Value=4)                        28   5.0  
SB_52151| Best HMM Match : TPR_1 (HMM E-Value=0)                       28   6.6  
SB_48977| Best HMM Match : TPR_1 (HMM E-Value=0)                       28   6.6  
SB_232| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.6  
SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   8.7  
SB_23137| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   8.7  
SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08)           27   8.7  

>SB_38603| Best HMM Match : TPR_1 (HMM E-Value=2e-20)
          Length = 313

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 73  SSTIMNSSHNKHSIPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYL 231
           S  + +S   K+ +  + L D  +RF  +L +ED  + V IC  +E  H F L
Sbjct: 223 SRALKDSLQKKYGLESNALSDEDTRFTSSLISEDNTSFVVICLSLEWLHLFTL 275


>SB_54462| Best HMM Match : TPR_1 (HMM E-Value=3.9e-32)
          Length = 425

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 73  SSTIMNSSHNKHSIPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYL 231
           S  + +S   K+ +  +   D  +RF  +L +ED  + V IC  +E  H F L
Sbjct: 300 SRALKDSLQKKYGLESNAPSDEDTRFTSSLISEDNTSFVVICLSLEWLHLFTL 352


>SB_44702| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.03)
          Length = 307

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 442 HIGQKPPGVSLKGRSMKMRSPGMC 513
           H   KPP  S+KG  +K+ +PG C
Sbjct: 14  HFEVKPPKPSVKGHPVKLLTPGQC 37


>SB_23418| Best HMM Match : NAD_binding_1 (HMM E-Value=1.2e-16)
          Length = 594

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 183 VSSIFCW*IYYETTTKVI*YIYWNRVFVMT*IHN--SRTHICISSFAVYYILSLL 25
           +S++F   + Y T+T VI    WNR +     H   S +H  IS FA++    LL
Sbjct: 503 ISTMFSIPVLYFTSTSVI----WNRQYCFMDFHQHESLSHYIISLFAIFIATPLL 553


>SB_1148| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 860

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 73  SSTIMNSSHNKHSIPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYL 231
           S  + +S   K+ +  +   D  +R+  +L +ED  + V IC  +E  H F L
Sbjct: 714 SRALKDSLQKKYGLESNAPSDEDTRYTSSLISEDNTSFVVICLSLEWLHLFTL 766


>SB_28422| Best HMM Match : TerC (HMM E-Value=4)
          Length = 465

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 97  HNKHSIPIDILDDLCSRFIINLPAEDRGNLVRICFQIELA-HWF 225
           H KHS P  I    C R ++N   ++R     + + + LA HW+
Sbjct: 323 HRKHSHPHPIWVTWCHRMVVNPKPKERCVNDTVLYYVNLAQHWW 366


>SB_52151| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1137

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 73  SSTIMNSSHNKHSIPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYL 231
           S  + +S   K+ +  +   D  +R+  +L +ED  + V IC  +E  H F L
Sbjct: 620 SRALKDSLQKKYGLESNTPSDEDTRYRSSLISEDNRSFVVICLSLEWLHLFTL 672


>SB_48977| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 725

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 73  SSTIMNSSHNKHSIPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYL 231
           S  + +S   K+ +  +   D  +R+  +L +ED  + V IC  +E  H F L
Sbjct: 409 SRALKDSLQKKYGLESNAPSDEDTRYRSSLISEDNTSFVVICLSLEWLHLFTL 461


>SB_232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 73  SSTIMNSSHNKHSIPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYL 231
           S  + +S   K+ +  +   D  +R+  +L +ED  + V IC  I+  H F L
Sbjct: 346 SRALKDSLQKKYGLESNAPSDEDTRYTSSLISEDNTSFVVICLSIKWLHLFTL 398


>SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 133 DLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDYY 240
           DLC +   +L   D   L  I   + + HWF++DY+
Sbjct: 60  DLCVKCTKSLRLHDWLYLGFIILTVIVLHWFFIDYF 95


>SB_42486| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1554

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -1

Query: 400 IAPYVGTVCLYSLQLSKTASRLLTCSRSCGTCWK-----ICAANSLIPQGYTFLIRQCSN 236
           + P V    LY++QLS+  S   TCS +  T  K        + S +P   T LI+  S 
Sbjct: 127 VIPDVTVDPLYAVQLSQGDSFNFTCSSATHTTLKWTKRPKTGSESDVPSSQTVLIKDTSK 186

Query: 235 NPNKTNEPIRSGSIS 191
           N  +    IR+   S
Sbjct: 187 NQQRLILMIRNAQPS 201


>SB_23137| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1022

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +1

Query: 199 FQIELAHWFYLDYYCTDESRKYTPVVLESLQHIFSNMSRNSE 324
           F +   HW +     T E+ K TPV LE+ ++      +  E
Sbjct: 75  FNVSYCHWSFPRCDYTTETIKSTPVCLETCEYFMKKCDKEFE 116


>SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08)
          Length = 542

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +1

Query: 355 ITGENINRLYLHTELYCSMMTSLMCFLYNHIGQKPPGVSLKGRSMKMRSPG 507
           I G  +   ++H     S++  + CF +N +G   P  +LKG+  +++S G
Sbjct: 223 IGGGGLGLAFVHLLSVLSLI--IFCFCFNTVGGLSPIDALKGKESEVQSGG 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,696,019
Number of Sequences: 59808
Number of extensions: 369213
Number of successful extensions: 770
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)