Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0135
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82269-7|CAB05204.2| 786|Caenorhabditis elegans Hypothetical pr... 84 8e-17
Z82269-6|CAB05206.3| 809|Caenorhabditis elegans Hypothetical pr... 84 8e-17
DQ143943-1|AAZ73241.1| 770|Caenorhabditis elegans RNA-decapping... 84 8e-17
AL021488-8|CAJ43919.1| 786|Caenorhabditis elegans Hypothetical ... 84 8e-17
AL021488-7|CAJ43918.1| 809|Caenorhabditis elegans Hypothetical ... 84 8e-17
U88184-14|AAK31520.1| 821|Caenorhabditis elegans Hypothetical p... 29 3.3
AF106573-7|AAC78158.1| 838|Caenorhabditis elegans Hypothetical ... 28 5.8
Z68336-7|CAL69738.1| 236|Caenorhabditis elegans Hypothetical pr... 27 7.7
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 27 7.7
>Z82269-7|CAB05204.2| 786|Caenorhabditis elegans Hypothetical
protein F52G2.1b protein.
Length = 786
Score = 83.8 bits (198), Expect = 8e-17
Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +3
Query: 273 GIREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQSYWT 452
G R+F + QH LR++ D VL +REYK TVPTYGAI HV+LVQSY+
Sbjct: 204 GSRDFNFQMCQHCRVLRKYAHRADEVLAKFREYKSTVPTYGAILVDPEMDHVVLVQSYFA 263
Query: 453 KA-SWGFPKGKVNEDEEP 503
K +WGFPKGK+N+ E P
Sbjct: 264 KGKNWGFPKGKINQAEPP 281
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = +1
Query: 112 IPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDYYCTDESRKYTPVV 276
IP DILD+L RFI N+ + + +R+CF +ELAHW+Y+D+ D+ P V
Sbjct: 149 IPTDILDELEFRFISNMVECEINDNIRVCFHLELAHWYYIDHMVEDDKISGCPNV 203
>Z82269-6|CAB05206.3| 809|Caenorhabditis elegans Hypothetical
protein F52G2.1a protein.
Length = 809
Score = 83.8 bits (198), Expect = 8e-17
Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +3
Query: 273 GIREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQSYWT 452
G R+F + QH LR++ D VL +REYK TVPTYGAI HV+LVQSY+
Sbjct: 227 GSRDFNFQMCQHCRVLRKYAHRADEVLAKFREYKSTVPTYGAILVDPEMDHVVLVQSYFA 286
Query: 453 KA-SWGFPKGKVNEDEEP 503
K +WGFPKGK+N+ E P
Sbjct: 287 KGKNWGFPKGKINQAEPP 304
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = +1
Query: 112 IPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDYYCTDESRKYTPVV 276
IP DILD+L RFI N+ + + +R+CF +ELAHW+Y+D+ D+ P V
Sbjct: 172 IPTDILDELEFRFISNMVECEINDNIRVCFHLELAHWYYIDHMVEDDKISGCPNV 226
>DQ143943-1|AAZ73241.1| 770|Caenorhabditis elegans RNA-decapping
protein protein.
Length = 770
Score = 83.8 bits (198), Expect = 8e-17
Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +3
Query: 273 GIREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQSYWT 452
G R+F + QH LR++ D VL +REYK TVPTYGAI HV+LVQSY+
Sbjct: 188 GSRDFNFQMCQHCRVLRKYAHRADEVLAKFREYKSTVPTYGAILVDPEMDHVVLVQSYFA 247
Query: 453 KA-SWGFPKGKVNEDEEP 503
K +WGFPKGK+N+ E P
Sbjct: 248 KGKNWGFPKGKINQAEPP 265
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = +1
Query: 112 IPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDYYCTDESRKYTPVV 276
IP DILD+L RFI N+ + + +R+CF +ELAHW+Y+D+ D+ P V
Sbjct: 133 IPTDILDELEFRFISNMVECEINDNIRVCFHLELAHWYYIDHMVEDDKISGCPNV 187
>AL021488-8|CAJ43919.1| 786|Caenorhabditis elegans Hypothetical
protein F52G2.1b protein.
Length = 786
Score = 83.8 bits (198), Expect = 8e-17
Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +3
Query: 273 GIREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQSYWT 452
G R+F + QH LR++ D VL +REYK TVPTYGAI HV+LVQSY+
Sbjct: 204 GSRDFNFQMCQHCRVLRKYAHRADEVLAKFREYKSTVPTYGAILVDPEMDHVVLVQSYFA 263
Query: 453 KA-SWGFPKGKVNEDEEP 503
K +WGFPKGK+N+ E P
Sbjct: 264 KGKNWGFPKGKINQAEPP 281
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = +1
Query: 112 IPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDYYCTDESRKYTPVV 276
IP DILD+L RFI N+ + + +R+CF +ELAHW+Y+D+ D+ P V
Sbjct: 149 IPTDILDELEFRFISNMVECEINDNIRVCFHLELAHWYYIDHMVEDDKISGCPNV 203
>AL021488-7|CAJ43918.1| 809|Caenorhabditis elegans Hypothetical
protein F52G2.1a protein.
Length = 809
Score = 83.8 bits (198), Expect = 8e-17
Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +3
Query: 273 GIREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQSYWT 452
G R+F + QH LR++ D VL +REYK TVPTYGAI HV+LVQSY+
Sbjct: 227 GSRDFNFQMCQHCRVLRKYAHRADEVLAKFREYKSTVPTYGAILVDPEMDHVVLVQSYFA 286
Query: 453 KA-SWGFPKGKVNEDEEP 503
K +WGFPKGK+N+ E P
Sbjct: 287 KGKNWGFPKGKINQAEPP 304
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = +1
Query: 112 IPIDILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDYYCTDESRKYTPVV 276
IP DILD+L RFI N+ + + +R+CF +ELAHW+Y+D+ D+ P V
Sbjct: 172 IPTDILDELEFRFISNMVECEINDNIRVCFHLELAHWYYIDHMVEDDKISGCPNV 226
>U88184-14|AAK31520.1| 821|Caenorhabditis elegans Hypothetical
protein F36H5.1 protein.
Length = 821
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 313 GTCWKICAANSLIPQGYTFLIRQCSNNPN 227
GT W+IC +GY QC +NPN
Sbjct: 172 GTSWRICVKKE---EGYLGCYLQCESNPN 197
>AF106573-7|AAC78158.1| 838|Caenorhabditis elegans Hypothetical
protein F52D2.6 protein.
Length = 838
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +1
Query: 154 INLPAEDRGNLVRICFQI-ELA--HWFYLDYYCTDES-RKYTPVVLESLQHIFSNMSR 315
IN +D+ +++++ I E++ W YL+Y+C + + R P V++ + NM R
Sbjct: 683 INTNYKDKAHILKVNLNIHEMSPVKWLYLNYFCIETNPRLNGPYVIDPRVPLVRNMFR 740
>Z68336-7|CAL69738.1| 236|Caenorhabditis elegans Hypothetical
protein F22B3.10 protein.
Length = 236
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +2
Query: 206 SNWLIGFIWIITALTNQESIPLWY*RVCSTYFPTCPATPRT 328
SNW I + W++ +Y R+ C +TP+T
Sbjct: 119 SNWKISYTWLVNLYIKFFKSSSFYVRIDGKRTTACQSTPKT 159
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 187 VRICFQIELAHWFYLDYYCTDESRKYTPVVLESLQHIFSNMSRNSENMLAV 339
VR+ + H +++Y SRK+ PV +E L + ++ + E LAV
Sbjct: 1919 VRVTVSDDAGHVAFMEYLFHPHSRKHFPVFVEKLDTV--SVREHDEQELAV 1967
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,286,795
Number of Sequences: 27780
Number of extensions: 278902
Number of successful extensions: 762
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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