Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0135
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13570.1 68418.m01568 MutT/nudix family protein similar to mR...    58   6e-09
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ...    29   2.4  
At1g68760.1 68414.m07860 MutT/nudix family protein similar to SP...    29   3.1  
At3g32260.1 68416.m04113 hypothetical protein                          28   4.1  
At1g30920.1 68414.m03782 F-box family protein contains F-box dom...    28   4.1  
At4g12720.3 68417.m01998 MutT/nudix family protein similar to SP...    27   7.2  
At4g12720.2 68417.m01997 MutT/nudix family protein similar to SP...    27   7.2  
At4g12720.1 68417.m01996 MutT/nudix family protein similar to SP...    27   7.2  
At3g07680.1 68416.m00921 emp24/gp25L/p24 family protein similar ...    27   7.2  
At2g38450.1 68415.m04722 expressed protein                             27   7.2  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    27   7.2  
At1g03520.1 68414.m00333 glycosyltransferase family 14 protein /...    27   7.2  
At5g48910.1 68418.m06051 pentatricopeptide (PPR) repeat-containi...    27   9.5  

>At5g13570.1 68418.m01568 MutT/nudix family protein similar to
           mRNA-decapping enzyme [Homo sapiens] GI:23268269;
           contains Pfam profile PF00293: NUDIX domain
          Length = 373

 Score = 57.6 bits (133), Expect = 6e-09
 Identities = 28/81 (34%), Positives = 44/81 (54%)
 Frame = +3

Query: 258 KVYPCGIREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLV 437
           K+    ++EF + +F     LR +V+ +D +  ++  YK  VP  GAI         LLV
Sbjct: 67  KLKSLSLKEFTSLLFNSCDVLRPYVTHIDDIFKDFTSYKCRVPVTGAIILDETYERCLLV 126

Query: 438 QSYWTKASWGFPKGKVNEDEE 500
           +  W  +SW FP+GK ++DEE
Sbjct: 127 KG-WKGSSWSFPRGKKSKDEE 146



 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 20/38 (52%), Positives = 30/38 (78%)
 Frame = +1

Query: 121 DILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLD 234
           ++LDDLCSRF++N+P ED+ +  RI F +E A+W+Y D
Sbjct: 22  ELLDDLCSRFVLNVPEEDQQSFERILFLVEYAYWYYED 59



 Score = 35.5 bits (78), Expect = 0.027
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +2

Query: 509 CATREVLEETGFDISNLINK 568
           CA REVLEETGFD+S L+ +
Sbjct: 150 CAIREVLEETGFDVSKLLKR 169


>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -1

Query: 463 QEAFVQYDCXXXXXXXXXXXSIAPYVGTVCLYSLQLSKTASRLLTCSRSCGTCWK 299
           +EAF  Y C              PYV  +C +  ++S T+S L +   SCG C K
Sbjct: 260 KEAFPTYVCLRCIFVAHRDCIYFPYVIKICRHQHRISFTSS-LPSGKWSCGVCRK 313


>At1g68760.1 68414.m07860 MutT/nudix family protein similar to
           SP|Q58549 ADP-ribose pyrophosphatase (EC 3.6.1.13)
           {Methanococcus jannaschii}; contains Pfam profile
           PF00293: NUDIX domain
          Length = 147

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 506 ECATREVLEETGFDISNLINKNVT 577
           ECA REV+EETG  I  +    VT
Sbjct: 51  ECAAREVMEETGLKIEKMKLLTVT 74


>At3g32260.1 68416.m04113 hypothetical protein
          Length = 309

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 151 IINLPAEDRGNLVRICFQIELAHWFYLDY 237
           +I++  E + N +RICF   +  W+Y+ Y
Sbjct: 124 LIHVDCEVKTNRLRICFVEAMPKWYYIAY 152


>At1g30920.1 68414.m03782 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 400

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 85  MNSSHNKHSIPIDILDDLCSR 147
           MNS  N  SIPID++ D+ SR
Sbjct: 1   MNSEENTDSIPIDLILDILSR 21


>At4g12720.3 68417.m01998 MutT/nudix family protein similar to
           SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
           {Homo sapiens}; contains Pfam profile PF00293: NUDIX
           domain
          Length = 282

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = +3

Query: 393 GAIXXXXXXSHVLLVQS----YWTKASWGFPKGKVNEDEEPWNVLLERF*KRQGLI 548
           GA+        VL+VQ     +  K  W  P G +NE E+ W  +     +  G+I
Sbjct: 107 GALVINKNTKEVLVVQERSGFFKDKNVWKLPTGVINEGEDIWTGVAREVEEETGII 162


>At4g12720.2 68417.m01997 MutT/nudix family protein similar to
           SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
           {Homo sapiens}; contains Pfam profile PF00293: NUDIX
           domain
          Length = 282

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = +3

Query: 393 GAIXXXXXXSHVLLVQS----YWTKASWGFPKGKVNEDEEPWNVLLERF*KRQGLI 548
           GA+        VL+VQ     +  K  W  P G +NE E+ W  +     +  G+I
Sbjct: 107 GALVINKNTKEVLVVQERSGFFKDKNVWKLPTGVINEGEDIWTGVAREVEEETGII 162


>At4g12720.1 68417.m01996 MutT/nudix family protein similar to
           SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
           {Homo sapiens}; contains Pfam profile PF00293: NUDIX
           domain
          Length = 282

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = +3

Query: 393 GAIXXXXXXSHVLLVQS----YWTKASWGFPKGKVNEDEEPWNVLLERF*KRQGLI 548
           GA+        VL+VQ     +  K  W  P G +NE E+ W  +     +  G+I
Sbjct: 107 GALVINKNTKEVLVVQERSGFFKDKNVWKLPTGVINEGEDIWTGVAREVEEETGII 162


>At3g07680.1 68416.m00921 emp24/gp25L/p24 family protein similar to
           SP|Q15363 Cop-coated vesicle membrane protein p24
           precursor (p24A) {Homo sapiens}; contains Pfam profile
           PF01105: emp24/gp25L/p24 family
          Length = 208

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +1

Query: 193 ICFQIELAHWFYLDYYCTDESRKYTPVV--LESLQHIFSNMSRNSENMLAV*MQF*ITGE 366
           I F ++L H+ Y D +  DE   +TP++  +  L+    N+      + A   +  I  E
Sbjct: 110 IDFDVQLGHFAYYDQHAKDE--HFTPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNE 167

Query: 367 NINRLYLHTELY 402
           N+++  +H  L+
Sbjct: 168 NMSKRAVHKALF 179


>At2g38450.1 68415.m04722 expressed protein
          Length = 105

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +1

Query: 55  TTDADMSSTIMNSSHNKHSIPI-DILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYL 231
           ++D D SST   S   +  +P+  ++ D   R+  +   E +     I  Q+ L   +Y 
Sbjct: 3   SSDKDSSSTTTTSETTRRFVPLSSVVSDCAKRWFKDTLEEAKAG--NITMQVLLGQMYYS 60

Query: 232 DYYCTDESRK 261
            Y    ++RK
Sbjct: 61  GYGVPKDARK 70


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 328 CSRSCGTCWKICAANSLIPQGYTFLIRQCSNNPNKTNEPIRSGSI 194
           C ++C  C   C++ SLI +  T + RQ      +T E   S  I
Sbjct: 851 CKKTCDNC---CSSQSLIDKDVTLITRQLVELVKQTGERFSSAHI 892


>At1g03520.1 68414.m00333 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile PF02485: Core-2/I-Branching enzyme
          Length = 447

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 208 ELAHWFYLDYYCTDESRKYTPVVLESLQHIFSNMSRN 318
           E  HW   D++    +  Y  V  + L ++FSN+SRN
Sbjct: 193 ESLHW---DWFLNLSASDYPLVTQDDLLYVFSNLSRN 226


>At5g48910.1 68418.m06051 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 646

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 270 CGIREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQ 377
           CGI E A H+F+ +P  RE+V +  A+++ +  + Q
Sbjct: 322 CGIIEKAIHVFERLP--RENVITWSAMINGFAIHGQ 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,327,349
Number of Sequences: 28952
Number of extensions: 249891
Number of successful extensions: 648
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)