Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0132
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37)                  52   5e-07
SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13)                   34   0.10 
SB_56420| Best HMM Match : CUB (HMM E-Value=0.45)                      29   2.9  
SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)             28   6.6  
SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)              28   6.6  
SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)                 27   8.7  
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 27   8.7  
SB_44805| Best HMM Match : Col_cuticle_N (HMM E-Value=2.7)             27   8.7  

>SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37)
          Length = 93

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 29/86 (33%), Positives = 42/86 (48%)
 Frame = +3

Query: 255 DKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPLNLDMLQIGN 434
           ++++FL E YD  A   +   L ++  DNSV++ D K  +  LKR +      D   IG 
Sbjct: 5   ERFAFLAEWYDPQAALTRKYQLLFYASDNSVEMYDIKNRRLFLKRSKCDQYKADDFYIGA 64

Query: 435 IVNIFSKLLYIKDCAPATRENAFPNV 512
           IVNI S+ L I D       N   N+
Sbjct: 65  IVNIHSRQLKITDYCDKHTTNRLKNI 90


>SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13)
          Length = 557

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 456 LLYIKDCAPA---TRENAFPNVPSTFAMIXPIAPSEHGKINPHS 578
           LL  + C+P    T +  FP+ P+    + P  P++H K+ PH+
Sbjct: 266 LLTTQKCSPTPLLTTQKVFPHTPTDHPKVFPHTPTDHPKVIPHT 309



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 480 PATRENAFPNVPSTFAMIXPIAPSEHGKINPHS 578
           P      FP+ P+    + P  P++H K  PH+
Sbjct: 288 PTDHPKVFPHTPTDHPKVIPHTPTDHPKPVPHT 320


>SB_56420| Best HMM Match : CUB (HMM E-Value=0.45)
          Length = 1017

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 477 APATRENAFPNVPSTFAMIXPIAPSEHGKINPHS 578
           AP T  +AFP  P T A   P  P     ++P S
Sbjct: 545 APQTTASAFPTPPQTTASASPTPPQTTASVSPTS 578


>SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 386 FQNIFAFLRVYYLNRIVKWKIIEG*IFYFVSILIIHFTQETIFIK*SYTIAI 231
           + N    L V+Y NR++   ++     YFV +L +H+T   I +   YT  +
Sbjct: 57  YTNRVIVLPVHYTNRVI---VLPVNYTYFVIVLPVHYTNRVIVLPVHYTYLV 105


>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
          Length = 488

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 300 EIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPLNLDML 422
           ++ ++T+N  PF     ++ ++     L  V+LPP  LD +
Sbjct: 298 DLNEITMNLVPFPKLHYLVSSQTPLYALTDVKLPPRRLDQM 338


>SB_24829| Best HMM Match : Gelsolin (HMM E-Value=5.8e-35)
          Length = 1078

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/75 (20%), Positives = 37/75 (49%)
 Frame = +3

Query: 228  IDSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPL 407
            ++S+ + +LDK   + +    D D+ + + L        +++ + KKGK  + R      
Sbjct: 954  LNSDDVFILDKGKTIYQK--GDYDDFEPVLLRVSDASGQMKLTEMKKGKGRITRNDFDEK 1011

Query: 408  NLDMLQIGNIVNIFS 452
            ++ +   GN++ ++S
Sbjct: 1012 DVFLFDTGNVLFVYS 1026


>SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)
          Length = 349

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -1

Query: 568 LILPCSLGAIGLIMANVLGTFGKAFSRVAGAQSLIYNNFENILTIL 431
           L+L  S G++GL              R AG    IYN F NI  IL
Sbjct: 292 LLLTLSCGSLGLYAPTGSANSVDLSPRFAGVTMAIYNCFSNITGIL 337


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 465  IKDCAPATRENAFPNVPSTFAMIXPIAPSEHGKINPHSS 581
            ++   P T  ++     STF +I P AP + G   PH S
Sbjct: 1203 VRPATPTTPVSSSAVPGSTFTVIDPQAPGQMGFFRPHLS 1241


>SB_44805| Best HMM Match : Col_cuticle_N (HMM E-Value=2.7)
          Length = 251

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 255 DKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDA---KKGKNVLKR 389
           D Y FL    + + +E  D+   YF  +  V+II +   +KG N   R
Sbjct: 185 DVYEFLRAEDEAEVEEFNDILYEYFGMNARVEIITSSRRRKGNNAKSR 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,152,177
Number of Sequences: 59808
Number of extensions: 281899
Number of successful extensions: 657
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)