Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0131
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 31 0.13
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 31 0.17
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 30 0.22
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 28 0.90
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 1.6
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 26 3.6
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 26 4.8
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 26 4.8
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 8.4
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 25 8.4
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 8.4
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 8.4
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 25 8.4
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.1 bits (67), Expect = 0.13
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 274 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 417
P P ++P V P +PV P T++ + P ++P +VP S
Sbjct: 221 PPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQS 268
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 30.7 bits (66), Expect = 0.17
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 211 VQEILKDMASQGDYAVKHQRWPKPPELSPIYLPVSPVMP 327
+Q IL+ +A +GD + PKPP + I P+ P P
Sbjct: 358 LQSILRSLAIEGDDDEVAKVLPKPPSVPTIQAPIPPEAP 396
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 30.3 bits (65), Expect = 0.22
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 253 AVKHQRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 393
AVKH P PP P+ +SP MP PLT S T S PE+ P S
Sbjct: 739 AVKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 28.3 bits (60), Expect = 0.90
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 214 QEILKDMASQGDYAVKHQRWPKPPELSPIYLPVSPVMPVQP-LTSLTLTQTASGPETSPA 390
++I K++A+ WP PP + L V+ QP ++ + T S T P+
Sbjct: 405 RDIAKNVATWLKNGENFSSWPLPPLMDLASLSVAEPRDSQPSVSQVNDTFVKSSDSTFPS 464
Query: 391 SDNLSVPS 414
S ++ PS
Sbjct: 465 SQSMQSPS 472
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 94 NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYAVKHQ 267
NQ S D+D+ ASS++S A D+D N+ +A GD + +H+
Sbjct: 3 NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQHE 61
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 3.6
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = +1
Query: 163 AWDYVDDTDKSIAILNVQEILKDMASQGDYAVKHQRWPKPPELSPIYLPVSPVMPVQPLT 342
A++ DT + LN E + M +QG SP + +PV P QPL
Sbjct: 242 AYEVTGDTRAASPTLNPFEQMMAMTNQGMSVSPGVETTS----SPFF--TAPVEPNQPLQ 295
Query: 343 SLTLTQTASGPETSPASDNLSVPSS 417
L + T P + + L++PS+
Sbjct: 296 PLRPSMTGPVPSSMGSEATLNMPST 320
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 100 YSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAIL-NVQEILKDMASQGDYAVKHQRWP 276
Y+D+E P D + K S+++ +A+ +V + + L N I + + G + R+P
Sbjct: 158 YTDSEAPNDSEKQKNSTLLPKAYLFVPGLENIRSYLPNRHWIESNAITTGKAVEELPRFP 217
Query: 277 KPPE 288
P+
Sbjct: 218 DDPK 221
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 282 RFGPPLMLDCIIALAGHVLQDLLNVEDGDAFVSVIDVVP 166
RFGPPLM + L G V+ +++ G S+ID P
Sbjct: 286 RFGPPLMKTTSVVL-GLVVGMIISAATGYWDHSIIDAAP 323
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.0 bits (52), Expect = 8.4
Identities = 23/87 (26%), Positives = 37/87 (42%)
Frame = +1
Query: 55 VATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDM 234
V T+A A + + +DNEIP D A+S + D+ I L+ +L +
Sbjct: 386 VKTAAELASLQNVTETTDNEIPNSPDFLDAAS----------EEDEHIPSLDSSSLLTPL 435
Query: 235 ASQGDYAVKHQRWPKPPELSPIYLPVS 315
A A + ++ P SP+ P S
Sbjct: 436 ALPNKKAFQPVKFRVPSFSSPLVKPAS 462
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 247 DYAVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVP 411
DY+ ++P + SP+ + + +P S + QTA +S SD S P
Sbjct: 152 DYSKVSGKYPSVIDNSPVKSKLGALPSARPRLSYSAAQTAPISLSSEGSDYFSRP 206
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +1
Query: 271 WPKPPELS-PIY-----LPVSPVMPVQPLTSLTLTQTASGPETSP 387
+P P +S P Y +PVSP +PV P +S + P + P
Sbjct: 287 YPHPTGISLPFYPFDSGIPVSPNIPVSPSSSFVPMYPTTFPSSKP 331
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 497 GWS-DRVSELTRVDDELIDKIQVLSHVSE 414
G+S DR+ ELTR+D ++K+ L S+
Sbjct: 901 GYSVDRIWELTRIDKWFLEKLMGLIRTSQ 929
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 172 YVDDTDKSIAILNVQEILKDMASQGDYAVKHQRWPKPPELSPIYLPVS 315
+V D ++ +L+ I K KH P PP S LP+S
Sbjct: 114 FVQKLDSTLRVLDYNAINKFSIDLTPVQRKHVDMPPPPVFSQTSLPMS 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,860
Number of Sequences: 5004
Number of extensions: 47147
Number of successful extensions: 182
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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