Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0129
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 149 3e-37
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 94 2e-20
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 88 1e-18
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 71 2e-13
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 2.0
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 27 3.4
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c... 27 3.4
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 26 6.0
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 25 7.9
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 149 bits (362), Expect = 3e-37
Identities = 67/93 (72%), Positives = 79/93 (84%)
Frame = +2
Query: 254 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 433
HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHLVSA M+GVTT RFPG+LN+D
Sbjct: 190 HQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSD 249
Query: 434 LRKLAVNMVPFPRLHFFMPGFAPLTLVGANSIE 532
LRKLAVNMVPFPRLHFFM GFAPL +G++S +
Sbjct: 250 LRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQ 282
Score = 110 bits (264), Expect = 2e-25
Identities = 54/84 (64%), Positives = 59/84 (70%)
Frame = +3
Query: 3 YTEGAELVDSVLDVVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMN 182
YTEGAEL D+VLDVVR+EAE CD LQGFQ KIREEYPDR+M
Sbjct: 106 YTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMA 165
Query: 183 TFSVVPSPKVSDTVVEPYNATLSV 254
TFSV P+PK SDTVVEPYNATLS+
Sbjct: 166 TFSVAPAPKSSDTVVEPYNATLSM 189
Score = 90.6 bits (215), Expect = 2e-19
Identities = 41/69 (59%), Positives = 52/69 (75%)
Frame = +1
Query: 490 GLCTIDPRGSQQYRALSVPELTQQMFDAKNMMAACDPRHGRYLXVAAVFAGRMSMKGXDE 669
G + GS ++A+SVPELTQQMFDA NMM A DPRHGRYL VAA+F G++SMK DE
Sbjct: 269 GFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDE 328
Query: 670 QMLNIQDQN 696
Q+ ++Q +N
Sbjct: 329 QIRSVQTKN 337
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 94.3 bits (224), Expect = 2e-20
Identities = 38/85 (44%), Positives = 58/85 (68%)
Frame = +2
Query: 251 SHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNA 430
+H ++N+D T+ +DNEA YDIC R L + PTY +LN L++ +S +T LRF G LN
Sbjct: 195 THATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNV 254
Query: 431 DLRKLAVNMVPFPRLHFFMPGFAPL 505
DL + N+VP+PR+HF + ++P+
Sbjct: 255 DLNEFQTNLVPYPRIHFPLVTYSPI 279
Score = 61.7 bits (143), Expect = 1e-10
Identities = 31/83 (37%), Positives = 45/83 (54%)
Frame = +3
Query: 3 YTEGAELVDSVLDVVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMN 182
YT G E++DSVL+ +R+ A+ C LQGF ++ EY +
Sbjct: 112 YTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNL 171
Query: 183 TFSVVPSPKVSDTVVEPYNATLS 251
FSV P+P+VS +VVEPYN+ L+
Sbjct: 172 QFSVYPAPQVSTSVVEPYNSVLT 194
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 538 SVPELTQQMFDAKNMMAACDPRHGRYLXVAAVFAG 642
SV E+T Q F+ N M CDPR GRY+ ++ G
Sbjct: 291 SVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRG 325
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 88.2 bits (209), Expect = 1e-18
Identities = 36/85 (42%), Positives = 56/85 (65%)
Frame = +2
Query: 251 SHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNA 430
+H ++ D T+ +DNE+ YDIC R L + P+Y +LN L++ +S +T LRF G LN
Sbjct: 191 THATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNV 250
Query: 431 DLRKLAVNMVPFPRLHFFMPGFAPL 505
DL + N+VP+PR+HF + +AP+
Sbjct: 251 DLAEFQTNLVPYPRIHFPLVTYAPI 275
Score = 61.3 bits (142), Expect = 1e-10
Identities = 32/83 (38%), Positives = 43/83 (51%)
Frame = +3
Query: 3 YTEGAELVDSVLDVVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMN 182
YT G ELVD V D +R+ A+ C LQGF ++ EY +
Sbjct: 108 YTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKL 167
Query: 183 TFSVVPSPKVSDTVVEPYNATLS 251
FSV P+P+VS +VVEPYN+ L+
Sbjct: 168 QFSVYPAPQVSTSVVEPYNSVLT 190
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 538 SVPELTQQMFDAKNMMAACDPRHGRYLXVAAVFAG 642
SV E+T Q F+ N M CDPR GRY+ ++ G
Sbjct: 287 SVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRG 321
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 70.5 bits (165), Expect = 2e-13
Identities = 33/84 (39%), Positives = 44/84 (52%)
Frame = +2
Query: 257 QLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADL 436
+L N D +DN AL I L PT+ N LVS MS TT LR+PG +N DL
Sbjct: 194 RLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDL 253
Query: 437 RKLAVNMVPFPRLHFFMPGFAPLT 508
+ +++P PR HF + + P T
Sbjct: 254 VSIIASLIPSPRCHFLLTSYTPFT 277
Score = 58.4 bits (135), Expect = 9e-10
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 YTEGAELVDSVLDVVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMN 182
Y+ + + ++D++ +EA+G D L+GF ++ + YP +I+
Sbjct: 108 YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQ 167
Query: 183 TFSVVP-SPKVSDTVVEPYNATLSV 254
T+SV P S VSD VV+PYN+ L++
Sbjct: 168 TYSVFPNSQSVSDVVVQPYNSLLAL 192
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 170 SYYEYVFRGTKSKGFRYCGRAI*RNAISHQLVENTD 277
SY+E F+G KS F+ R++ +N QL+ D
Sbjct: 330 SYFENCFKGVKSLEFKIWSRSLRKNYNFEQLLRARD 365
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 359 LNHLVSATMSGVTTCLRFPGQLN 427
L HLV A + G++ C +PG+ N
Sbjct: 331 LTHLVDAPLLGMSVCPLYPGEEN 353
>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 374 KPNGSSPHTLGLLASKS*SRYRKAPHCLYNTSHQCFLP 261
KP+ ++P+ LL+ + +RK H ++ SHQ FLP
Sbjct: 31 KPSANNPN---LLSVDTRPTHRKGHHHKHSLSHQYFLP 65
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 120 IQYLLPENELAENPADNRSLL 58
+QY+L +NEL NP + ++L
Sbjct: 342 VQYILEQNELGRNPYNTTNVL 362
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 100 LWEEVLDLVWGLF-*FPKSVKSIQIVL*IRF 189
LW V++++WGL F +V S++ ++ +RF
Sbjct: 98 LWFSVMNILWGLMTIFSFAVHSVRALMILRF 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,580
Number of Sequences: 5004
Number of extensions: 64974
Number of successful extensions: 204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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