Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0129
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.8  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 24  VDSVLDVVRKEAEGCDCLQG 83
           +DS+++++R   + CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 446 LVSANRRSVVLGIASTWSHQTLSLKPNGSSPHTLGLLASKS 324
           L S+   + V   A  ++ Q  S  P GSSP   G  AS S
Sbjct: 39  LESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTS 79


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +1

Query: 472 VTLLYAGLCTIDPRGSQQ--YRAL 537
           V+ L +G+  +DP+GS +  YRAL
Sbjct: 116 VSSLISGMAQLDPKGSGRMGYRAL 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,140
Number of Sequences: 438
Number of extensions: 4746
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)