Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0127
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    22   3.1  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   4.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   4.0  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   7.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.1  
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    21   7.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   7.1  

>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 426 MSEXDATVPAPARASWGRTYVHHDTCYRRHPDR 328
           ++  D T+P       G+  VH +  Y  +PD+
Sbjct: 75  LASGDYTLPVGTTVGIGQFLVHRNPKYFPNPDK 107


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 141 PVRIQGAHTSGPGQ*CSRFYVQELEAAL 224
           PVRI G H  G    C++      E AL
Sbjct: 196 PVRIMGVHRPGFDNDCNKNTSTSKEIAL 223


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 127 HPAPSHSSLNTPTL 86
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 114 DGAGCSQAPPVRIQGAHTSGP 176
           + +  S  PP+ I GA  +GP
Sbjct: 300 EDSSISGVPPLSIDGALEAGP 320


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -2

Query: 316 PPPRTRGIRATARPVPHDSALFGD 245
           PPPR      T R V     L+ D
Sbjct: 735 PPPRVESFAETVRTVSKIPPLYKD 758


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 254 QCRIMGYRTCCCPN 295
           Q R  G  TC CPN
Sbjct: 282 QRRYTGRATCDCPN 295


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 426 MSEXDATVPAPARASWGRTYVHHDTCYRRHPDR 328
           ++  D TVPA      G   VH    Y  +PD+
Sbjct: 75  LASGDYTVPAGCTVVIGTFKVHRLEEYYPNPDK 107


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 318 YHHHGHAEFGQQHV 277
           +HH GH    Q HV
Sbjct: 323 HHHAGHHIHAQHHV 336


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,910
Number of Sequences: 336
Number of extensions: 2234
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)