Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0127
(449 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 95 2e-20
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 29 2.1
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical pr... 28 3.6
U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein. 28 3.6
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 27 4.8
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 27 4.8
AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical... 27 6.3
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 27 8.3
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 27 8.3
Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical pr... 27 8.3
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 27 8.3
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 27 8.3
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 95.1 bits (226), Expect = 2e-20
Identities = 42/48 (87%), Positives = 44/48 (91%)
Frame = +3
Query: 252 NSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMXAPTKPWR 395
+SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG M AP K +R
Sbjct: 61 HSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFR 108
Score = 58.0 bits (134), Expect = 3e-09
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = +1
Query: 76 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 252
ARPLV+VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQ 60
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 294 IPRVRGGGTHRSGQGAFGNMC-RGGRMXAPTKPWRALAPS 410
+P GGG S Q A GN C GG AP LAP+
Sbjct: 26 LPGAGGGGCCSSAQPACGNPCGGGGAAPAPVYAAAPLAPA 65
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -2
Query: 406 GASARQGFVGAXIRPPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 266
G +G GA PP P AP P +++PPP G R P+ H
Sbjct: 148 GMMPPRGMPGAY--PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 27.9 bits (59), Expect = 3.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -2
Query: 406 GASARQGFVGAXIRPPRHMLPKAP*PDLWVPPPRTRGIRATAR-PVPH 266
G +G GA PP P AP P +++PPP G R P+ H
Sbjct: 148 GMMPPRGMPGAY--PPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGH 193
>Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical
protein R10E12.1d protein.
Length = 498
Score = 27.9 bits (59), Expect = 3.6
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -2
Query: 406 GASARQGFVGAXIRPPRHMLPKAP*PDLWVPPPRT-RGIRATARPVPHDSALFGDQPP 236
G +A Q A RPP P AP + +PPPRT + ++AT P + Q P
Sbjct: 359 GTNAAQSPANAPPRPPPPR-PAAPSVESPIPPPRTQQSMQATPGAPPQYNPYQQQQQP 415
>Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical
protein R10E12.1b protein.
Length = 882
Score = 27.9 bits (59), Expect = 3.6
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -2
Query: 406 GASARQGFVGAXIRPPRHMLPKAP*PDLWVPPPRT-RGIRATARPVPHDSALFGDQPP 236
G +A Q A RPP P AP + +PPPRT + ++AT P + Q P
Sbjct: 743 GTNAAQSPANAPPRPPPPR-PAAPSVESPIPPPRTQQSMQATPGAPPQYNPYQQQQQP 799
>Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical
protein R10E12.1a protein.
Length = 861
Score = 27.9 bits (59), Expect = 3.6
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -2
Query: 406 GASARQGFVGAXIRPPRHMLPKAP*PDLWVPPPRT-RGIRATARPVPHDSALFGDQPP 236
G +A Q A RPP P AP + +PPPRT + ++AT P + Q P
Sbjct: 722 GTNAAQSPANAPPRPPPPR-PAAPSVESPIPPPRTQQSMQATPGAPPQYNPYQQQQQP 778
>U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein.
Length = 861
Score = 27.9 bits (59), Expect = 3.6
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -2
Query: 406 GASARQGFVGAXIRPPRHMLPKAP*PDLWVPPPRT-RGIRATARPVPHDSALFGDQPP 236
G +A Q A RPP P AP + +PPPRT + ++AT P + Q P
Sbjct: 722 GTNAAQSPANAPPRPPPPR-PAAPSVESPIPPPRTQQSMQATPGAPPQYNPYQQQQQP 778
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 124 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 23
P S +S N PT+K+ L I+ YF PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 27.5 bits (58), Expect = 4.8
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -3
Query: 330 RTYGYHHHGHAEFGQQHVRYPMIRHCLVTSLLAHAVGLPRVLGHRNVNIIDQVRTYGRLE 151
R GY+ + RYP +R + L + A LPR++ R+ + + R + R
Sbjct: 1376 RPEGYYEPPVQTYSPVPPRYPTLRRVDDSPLRSRAKSLPRIISPRHEHFVR--RPHSRNS 1433
Query: 150 YERE 139
Y E
Sbjct: 1434 YSNE 1437
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 363 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 280
HHD +++H + + HHHGH G H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145
>AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical
protein Y53F4B.36 protein.
Length = 297
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/58 (20%), Positives = 25/58 (43%)
Frame = +1
Query: 61 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 234
MS++V P +S V + + F++ P ++ D H+ + + CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 167 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 54
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 167 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 54
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical
protein R10E12.1c protein.
Length = 846
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 406 GASARQGFVGAXIRPPRHMLPKAP*PDLWVPPPRTR 299
G +A Q A RPP P AP + +PPPRT+
Sbjct: 743 GTNAAQSPANAPPRPPPPR-PAAPSVESPIPPPRTQ 777
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 176 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 63
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 176 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 63
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,039,185
Number of Sequences: 27780
Number of extensions: 221991
Number of successful extensions: 739
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -