Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0122
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    28   2.1  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    28   2.1  
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    27   6.5  
Z68298-1|CAA92598.2|  342|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin prot...    26   8.7  

>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = +1

Query: 61   EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRXRFXLSXNSGRKHSRCCTSILRKLS 231
            EH   SC+SG  G +C   C   +    D ISG       S   G +  +C    L+   
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249

Query: 232  GRXHC 246
            GR HC
Sbjct: 1250 GR-HC 1253


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = +1

Query: 61   EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRXRFXLSXNSGRKHSRCCTSILRKLS 231
            EH   SC+SG  G +C   C   +    D ISG       S   G +  +C    L+   
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-----HCSCQPGWRGKKCNRPCLKGYF 1249

Query: 232  GRXHC 246
            GR HC
Sbjct: 1250 GR-HC 1253


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 235  GHLISVVCLCSSGCASCRYSX*XETEXGSH*WSQQTPS 122
            GH  +V CLCSS  +S   S   +       +SQ TP+
Sbjct: 909  GHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946


>Z68298-1|CAA92598.2|  342|Caenorhabditis elegans Hypothetical
           protein F44D12.2 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 125 QCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRR 27
           +CH+  +  PRLP ++  + C   FC + A  R
Sbjct: 214 ECHV-DYFNPRLPYVKSGSSCIGQFCFISATSR 245


>AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin protein
           2 protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -1

Query: 146 LMESTDPQCHILQHRRPRLPLMQLEAPCSF 57
           L+E  DP C ++ +++P++    +E   +F
Sbjct: 68  LIEKLDPSCRVVYNKKPKMAFPMMENISNF 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,445,054
Number of Sequences: 27780
Number of extensions: 89172
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)