Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0119
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.54 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   3.8  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   5.0  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   6.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   6.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.7  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = -1

Query: 528 PMAALLVAHASYARTSIVGVKNFLNHCKNSKLSWKRPFTSLSMGTILSTPIFLKPACNIL 349
           P   L VAHAS      +  + +   CK  K  +    T  S+  +L+  I       IL
Sbjct: 147 PFVELTVAHASVLTILAISFERYYAICKPLKAGYICTKTRASLICLLAWFIAALFTSPIL 206

Query: 348 KFCIYSCSKFVLNLILFI 295
               Y   ++V   I+F+
Sbjct: 207 AITQYGPEEYVDGSIVFV 224


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 591 PSSQLXPQTIWESYYNSP 644
           PSS     TI   YYNSP
Sbjct: 403 PSSVHSHSTIGNDYYNSP 420


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 463 FLEPLQKLKIILET-TLHQFVNGYYLVHTHLF 371
           F+  +  L I+  + TLH   N Y    TH+F
Sbjct: 44  FIIAIYVLTILTSSVTLHVCFNSYMYAFTHIF 75


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 279 NSMSMNWQWXHLYTTLR 229
           NSM   + W ++Y T++
Sbjct: 150 NSMKREYYWPNMYRTIK 166


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -1

Query: 528 PMAALLVAHASYARTSIVGVKNFLNHCKNSKLSWKRPFTSLSMGTILS 385
           P   L VAHAS      +  + +   CK  K  +    T  S+  +L+
Sbjct: 147 PFVELTVAHASVLTILAISFERYYAICKPLKAGYICTKTRASLICLLA 194


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -3

Query: 535 PVPHGSPSRRPCVICPH 485
           P PH  P R P    PH
Sbjct: 739 PHPHHQPPRNPVGTNPH 755


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -3

Query: 535 PVPHGSPSRRPCVICPH 485
           P PH  P R P    PH
Sbjct: 631 PHPHHQPPRNPVGTNPH 647


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,345
Number of Sequences: 336
Number of extensions: 3723
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)