Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0119
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 77 3e-15
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 29 0.44
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 2.3
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 27 2.3
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 5.4
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 5.4
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 7.1
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 7.1
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar... 25 7.1
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 25 9.4
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 76.6 bits (180), Expect = 3e-15
Identities = 38/95 (40%), Positives = 58/95 (61%)
Frame = +2
Query: 260 QFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDNF 439
Q D ++ +P+K++ F+ N E++YI N+K+LQ F K G+DK+V ++L + + QDN
Sbjct: 34 QIFDSIYQ-DIPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNL 92
Query: 440 EFLQWFKKFLTPTMEVRAYDAWATRRAAMGHRGSA 544
EF+QW K+F YDA A R G+RG A
Sbjct: 93 EFVQWAKRFWDQYYPGGDYDALARR----GNRGPA 123
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 29.5 bits (63), Expect = 0.44
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 293 PMKRIKFKTNLEHEYIQNFKILQAGFK 373
P KR+K KT L+HE+ + ++GF+
Sbjct: 388 PSKRVKAKTALQHEFFNACGVTRSGFE 414
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 514 SRRPCVICPHLHSWRQEFLEPLQKLKIILETTLHQFV 404
S P +I P SW EF+E + K K+ T FV
Sbjct: 1909 SHLPPIIQPEFQSWIVEFIEEVYKQKLEKSNTKVGFV 1945
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 27.1 bits (57), Expect = 2.3
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = -1
Query: 531 CPMAALLVAHASYARTSIVGVKNFLNHCKNSKLSWKRPFTSLSMGT--ILSTPIFLKPAC 358
CP+ +L + +S V +K+ LNH S + + P S + GT L++P L+ A
Sbjct: 350 CPVCGVLSEVYDISASSTVTLKDILNHYSKS-YNLQNPSVSTAAGTPLYLASPPALQVAT 408
Query: 357 N-ILKFCIYSCSKFVLNLIL 301
+ L I S + +NL++
Sbjct: 409 SKNLSQPILSITSVDVNLVI 428
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 308 KFKTNLEHEYIQNFKILQAGFK 373
K TNLE+EY +KI+Q FK
Sbjct: 748 KSSTNLENEYQTPWKIIQNPFK 769
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +3
Query: 213 SNFAKIEELCTGAAIASSWTCCSLAVYQ*KESNLRQIWNMNIYRTLKYYKLVL 371
+ +A++E L +A + ++Q S LR I N+N+Y+ + KL++
Sbjct: 632 NTYAQLEHLSGAFTMAET---IFKTIFQIHASQLRYIDNLNVYKNWAFRKLLI 681
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 7.1
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -1
Query: 486 TSIVGVKNFLNHCKNSKLSWKRPFTSLSMGTILSTPIFLKPACNILKFCIYSCSKFVLNL 307
T+ VKN LN K+ +++P L+ G + + NI+ F + +L L
Sbjct: 312 TASNAVKNLLNDSKSDLTKFRKPMFFLAFGKYWQLNLPIYQVLNII-FAVICPIVLLLTL 370
Query: 306 ILF 298
I F
Sbjct: 371 IRF 373
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 425 FQDNFEFLQWFKKFLTPTMEV 487
FQ++ E+L WFKK L +++
Sbjct: 65 FQNDNEYLVWFKKHLNERLQL 85
>SPCC970.06 |||cargo receptor for soluble proteins
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 139 TFTAIFTMYQPLMKKFLTV 83
TF A FT Y PL+ +FL V
Sbjct: 45 TFMAPFTPYMPLLGRFLIV 63
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Frame = -3
Query: 520 SPSRRPCVICPHLHSWRQEFLEPLQKLKII-----LETTLHQFVNGYYLVHTHLFKTS 362
S S PC PHL S +++ PL L +E L+ F TH+F +
Sbjct: 603 SHSFSPCYFSPHLTSLSADYIIPLSDLVAYGDGSRIENELYSFSVKQKNQRTHVFSVT 660
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,736
Number of Sequences: 5004
Number of extensions: 58833
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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