Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0119
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)             108   4e-24
SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33)       29   2.5  
SB_25586| Best HMM Match : RVT_1 (HMM E-Value=2.3e-18)                 29   4.3  
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)                      29   4.3  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4)                    27   9.9  
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)                 27   9.9  

>SB_18003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score =  108 bits (259), Expect = 4e-24
 Identities = 48/75 (64%), Positives = 56/75 (74%)
 Frame = +2

Query: 290 VPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFL 469
           VP+K++KF    EHEYI NFKILQ+ FKK G DKI+P+DKLVKGRFQDNFEFLQWFKKF 
Sbjct: 43  VPLKKVKFGAKQEHEYIANFKILQSAFKKCGCDKIIPVDKLVKGRFQDNFEFLQWFKKFF 102

Query: 470 TPTMEVRAYDAWATR 514
                 + Y+A   R
Sbjct: 103 DANYGGQEYNAVEAR 117


>SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33)
          Length = 386

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
 Frame = +2

Query: 230 RRVVYRCXHCQFMDMLFPGSVPMKRIKFKTNLEH-----EYIQNFKILQAGFKKMGVDKI 394
           RR    C H +F         P K  K+ T L H     E I NF  L       G D I
Sbjct: 85  RRPHILCNHARFNKKPMNILFPKKDTKYLTILRHPVTHFESIFNFMKLWDSLNIKGRDSI 144

Query: 395 VPIDKLVKGRFQDNFEFL 448
             +DK ++G    N E+L
Sbjct: 145 EIMDKFLQGNSSFNPEYL 162


>SB_25586| Best HMM Match : RVT_1 (HMM E-Value=2.3e-18)
          Length = 802

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
 Frame = +2

Query: 440 EFLQWFKKFLTPTMEVRAYDAWATRRAAMGH-----RGSAXPKGRCR*ENRRPRSAKFAA 604
           E+LQ  K   TP+ +  A +A   +    GH     +G A PK R       P  A   A
Sbjct: 103 EYLQALKTLKTPSTKCPALEAICNKCQKKGHFAKVCKGKAVPKERVSAATWSPILATLTA 162

Query: 605 RXPNHLGK 628
             P  L K
Sbjct: 163 NPPKSLSK 170


>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
          Length = 401

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 168 LSRHDMLAWVNDCLQSNFAKIEELCTGAAIASSWTCCSL 284
           L   D+L W++     + AK +  C   +   +WT CSL
Sbjct: 47  LENVDVLMWIHSSAAKSLAKTKLRCLRLSWKQAWTPCSL 85


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = +3

Query: 132  VNVYSTNVTSENLSRHDMLAWVNDCLQSNFAKIEELCTGAAIASSWT 272
            V    TN TS+ +   +   W  DC +     I  +C G    + WT
Sbjct: 5374 VQTNGTNTTSDKICECEQGYWGEDCGKLCKGGIWNVCNGHGTCNRWT 5420


>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 355 YFKVLYIFMFQICLKFDSFHWYTAREQHVHELAM 254
           Y  V Y+F+F   L++   H++   E+ +H+  +
Sbjct: 595 YVMVCYVFVFCALLEYAVVHYFFVYEKQIHQFQL 628


>SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4)
          Length = 647

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -1

Query: 354 ILKFCIYSCSKFVLNLILFIGTLPGNSMSMNWQWXHLYTTLRSSQ-SLTGDNHSPTLAYH 178
           +LKF +   S    N   F+ + PG ++     W  LY  LR S  SL  D +     ++
Sbjct: 1   MLKFAVNGYSPPFFNAPEFVPSPPGTAIYKERGWDELYGLLRGSHVSLCSDYYGDAGFWY 60

Query: 177 AAID 166
              D
Sbjct: 61  PGCD 64


>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 1256

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 202  IVSSQTLRRSKSCVQVXPLPVHGHAVPWQ 288
            I+ S+TLR S  C+    +P H   V W+
Sbjct: 1053 IIMSETLRDSLDCMYDARIPTHWKKVSWE 1081


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,400,122
Number of Sequences: 59808
Number of extensions: 434354
Number of successful extensions: 1010
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)