Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0118
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0542 - 4270190-4270476,4270552-4270738                           29   4.7  
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85...    29   4.7  
02_05_0352 + 28240913-28241362                                         29   4.7  
07_03_1747 + 29188568-29188715,29188793-29189541                       28   6.2  
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527...    28   6.2  
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422...    28   8.2  

>12_01_0542 - 4270190-4270476,4270552-4270738
          Length = 157

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 561 YNR*YHPIW*PRKTSPTGHFSCKINLVKSDYGLSKENF 674
           +++ Y P W    T    H SCKI+L+K   G  K  F
Sbjct: 73  FHKEYTPTWKGLSTLLGFHDSCKIDLLKGISGFEKNRF 110


>07_01_0115 +
           851505-852368,852611-852730,853000-853020,853253-853369,
           853466-853555,853730-853837,853897-853932,853933-854022
          Length = 481

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 240 YRFGSGTLKTAFDLMTTSLSSLGWKNPISAAIAS 139
           +R G  T   AFD MT   +S+   NP+ AA++S
Sbjct: 72  FRGGVATRSVAFDEMTPRRASVDVPNPLRAALSS 105


>02_05_0352 + 28240913-28241362
          Length = 149

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
 Frame = +3

Query: 54  RPASTWIRRNRDTRPLLDTSS----TSP-IIGIRKLLQPKSDSSTXDLI 185
           R  STW   +R +RP + T+S    T P ++G+RK  +P+ +  T +L+
Sbjct: 73  RTCSTWTSLSRTSRPTMATTSGVVKTLPELVGLRK--EPRWEDKTTELL 119


>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 471 ERLPVFRVHNRRGDRKLSIVGHLGPGKESRYNR*YHPIW*PRKTSPTGHFSCKIN 635
           E+L +  +H R G+R   I  HL PG+     + Y   W  R      H +C +N
Sbjct: 79  EQLLILELHGRWGNRWSKIAQHL-PGRTDNEIKNY---WRTRVQKHAKHLNCDVN 129


>07_03_0423 +
           18035688-18036572,18036659-18036978,18052618-18052724,
           18053001-18053104,18054129-18054328,18054422-18054522,
           18054695-18054841,18055007-18055166,18055287-18055368,
           18056070-18056336,18056846-18056973,18057513-18057672
          Length = 886

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 193 SHQVERSLQGPGTKSIYSRIIVSLCHSSLGADRVSKLLLDVSPTKFVFLAQTPFV 357
           S +++  + G  T + Y R  VSL  + LGA  V K     +  K      T FV
Sbjct: 521 SKEIDIIVNGAATTNFYERYDVSLASNVLGAKYVCKFAKKCANLKMFLHISTAFV 575


>07_03_0203 +
           15138864-15140452,15140629-15140726,15141924-15142235,
           15142437-15142749,15144025-15146023,15147033-15147068
          Length = 1448

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 483 VFRVHNRRGDRKLSIVGHLGPGKESRYNR*YHPI 584
           +  VH  +G + LSIVG  G GK +  N  YH +
Sbjct: 683 LMNVHAEQGLKVLSIVGFGGLGKTALANEVYHEL 716


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,187,059
Number of Sequences: 37544
Number of extensions: 408302
Number of successful extensions: 948
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)