Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0118
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    29   4.2  

>Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical
           protein T06G6.8 protein.
          Length = 417

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
 Frame = -1

Query: 623 GKVPRGRCFSW--SPDRMISAVISTLFSGTQMTDDRELAVSSSVVNSKYWKSFARAWTLT 450
           G+ P G   +W   PD      ++ +  G   T       SS +  S  WK+      L 
Sbjct: 179 GRSPTGDS-AWFLKPDNYALCGLAGICEGPAQTSTAPSTRSSKLPTSSVWKATTTPSDLP 237

Query: 449 SLPSRSLNLNLACWVFALLCTSTVPSKSITFTNGVWAKKTNLVGETSNNSLETRSAPRE 273
           + PSR+ +L       A L T+T  + +    +   ++ T  +   +   L T+ + RE
Sbjct: 238 TKPSRTRSLTSTSTTTAKLPTTTSTTFAAPQASTEPSEATEALATATPADLPTKPSGRE 296


>Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical
           protein T12D8.3 protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 464 AWTLTSLPSRSLNLNLACWVFALLCTSTVPSKSITFTNGVWAKKTNLVG 318
           +W   S  SRS  +   C + A L TS  P       +G+W K  + +G
Sbjct: 85  SWLANSQMSRSRAMEAYCELMAQLDTSWDPDAETVKKSGLWEKMPSTMG 133


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 258 DYDSRI-YRFGSGTLKTAFDLMTTSLSSLGWKNPISAAIAS 139
           DY   I YR+     KTA + +  +L+S+GW  P++ A+ S
Sbjct: 853 DYSVHICYRYHRSEYKTAQEKVADTLASVGW--PVTQAVCS 891


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,122,414
Number of Sequences: 27780
Number of extensions: 337829
Number of successful extensions: 866
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)