Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0116
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro...    29   0.52 
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    29   0.52 
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.1  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    27   2.7  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    26   3.6  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   6.3  

>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
           protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 89  HKTSVRYLINISNNRNQEAIAAEIGFFHPRLDKEVVIKSNAVF 217
           H    R + NI N + +++I  +  ++H +   E +IK+ A F
Sbjct: 120 HVPDERLVSNIKNTQTKDSITRDSAYYHRKTMTESIIKTLAAF 162


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = -2

Query: 195 TTSLSSLGWKNPISAAIAS*FLLLEMLMRYLTEVLCPCFFLSRSRQASPLNIYGESL 25
           T S S  G++  IS  + S   LL  L    T   C C F S +  +SP + Y ESL
Sbjct: 406 TRSTSGKGFETKISINLDSDIKLLNTLSPLETFFWC-CSFPSTASTSSPFSYYPESL 461


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 117 LMRYLTEVLCPCFFLSRSRQASPLNIYGESLLVGYVTVV 1
           L+R+     CP +F+ +S + S +  +  S L GY  +V
Sbjct: 39  LVRHNALTFCPYYFIEKSGKGSVVYFHPTSDLCGYKNIV 77


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 496 HKQKRQTASSLSSGHLXPEKRVDYNPLI--SSYLVT 597
           H++K  TASSL+S +L P   +   P++  +S+L T
Sbjct: 166 HEEKTWTASSLNSHNLTPSNVIRELPIVIHNSHLAT 201


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +2

Query: 14  YPTSSDSPYIFSGEACLDLDKKKQGHKTSVRYLINISNNRNQEAIAAEIGFFHPRLDKEV 193
           Y    ++ Y+   EA + +DK K   K +        +N+N      ++GFF P+ + ++
Sbjct: 150 YAKKQENAYL---EAVMQMDKSKSRFKGAETEYNRALDNKNTGDSQKKVGFFKPKSNAQL 206


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +2

Query: 374 KEQW----TCKARRRPSRAKLRFKLLEGKEVSVQALAKDFQ 484
           +EQW    + KARRR  R KLR + L GK+ S + L ++ Q
Sbjct: 469 QEQWLKDKSKKARRRAEREKLRSEGLLGKK-SKKKLLRESQ 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,881
Number of Sequences: 5004
Number of extensions: 47841
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)