Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0116
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85...    29   3.7  
02_05_0352 + 28240913-28241362                                         29   3.7  
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597...    28   4.9  
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527...    28   4.9  

>07_01_0115 +
           851505-852368,852611-852730,853000-853020,853253-853369,
           853466-853555,853730-853837,853897-853932,853933-854022
          Length = 481

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 240 YRFGSGTLKTAFDLMTTSLSSLGWKNPISAAIAS 139
           +R G  T   AFD MT   +S+   NP+ AA++S
Sbjct: 72  FRGGVATRSVAFDEMTPRRASVDVPNPLRAALSS 105


>02_05_0352 + 28240913-28241362
          Length = 149

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
 Frame = +3

Query: 54  RPASTWIRRNRDTRPLLDTSS----TSP-IIGIRKLLQPKSDSSTLDLI 185
           R  STW   +R +RP + T+S    T P ++G+RK  +P+ +  T +L+
Sbjct: 73  RTCSTWTSLSRTSRPTMATTSGVVKTLPELVGLRK--EPRWEDKTTELL 119


>08_01_0682 +
           5974622-5974745,5976182-5976371,5976953-5977024,
           5977482-5977553,5977688-5977759,5977842-5977913,
           5978690-5978761,5978855-5978926,5979017-5979091,
           5979529-5979594,5979821-5979885,5979975-5980354,
           5980438-5980636,5980713-5980763,5980955-5981073,
           5981190-5981400,5981524-5981755,5981842-5981992,
           5982089-5982447,5982750-5982768
          Length = 890

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = -1

Query: 235 IWFRDLEDCVRLDDYLLIKSRVEESDFGCNSFLIPIIGDVDEVSNRGLVSLFLLIQVEAG 56
           +W  D +   ++ DYL   +++ E  F  NSF  PI   +  +SN  L SL +   V   
Sbjct: 177 LWASDNDFTGKIPDYLGTLTKLVELRFQGNSFQGPIPASLSNLSN--LTSLRIGDIVNGS 234

Query: 55  LSAEYIRRVTA 23
            S  +I  +T+
Sbjct: 235 SSLAFISNLTS 245


>07_03_0423 +
           18035688-18036572,18036659-18036978,18052618-18052724,
           18053001-18053104,18054129-18054328,18054422-18054522,
           18054695-18054841,18055007-18055166,18055287-18055368,
           18056070-18056336,18056846-18056973,18057513-18057672
          Length = 886

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 193 SHQVERSLQGPGTKSIYSRIIVSLCHSSLGADRVSKLLLDVSPTKFVFLAQTPFV 357
           S +++  + G  T + Y R  VSL  + LGA  V K     +  K      T FV
Sbjct: 521 SKEIDIIVNGAATTNFYERYDVSLASNVLGAKYVCKFAKKCANLKMFLHISTAFV 575


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,853,848
Number of Sequences: 37544
Number of extensions: 316538
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)