Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0116
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    29   3.3  
U39649-1|AAA80383.2|  437|Caenorhabditis elegans Temporarily ass...    28   5.8  

>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 258 DYDSRI-YRFGSGTLKTAFDLMTTSLSSLGWKNPISAAIAS 139
           DY   I YR+     KTA + +  +L+S+GW  P++ A+ S
Sbjct: 853 DYSVHICYRYHRSEYKTAQEKVADTLASVGW--PVTQAVCS 891


>U39649-1|AAA80383.2|  437|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 249 protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 481 PVFRVHKQKRQTASSLSSGHLXPEKRVD 564
           PV R  + K +T + LS     PEKR+D
Sbjct: 190 PVSRAQRAKNETYTFLSMNRFWPEKRLD 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,393
Number of Sequences: 27780
Number of extensions: 261363
Number of successful extensions: 624
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)