Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0114
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 28 0.90
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 27 1.2
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 1.2
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 1.2
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 27 1.6
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 26 2.7
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 2.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 2.7
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 25 4.8
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 25 8.4
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 8.4
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 25 8.4
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 0.90
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 454 FGPFCCPSHGLPGNSS 407
FGP C SH LPGN++
Sbjct: 84 FGPKCALSHALPGNTN 99
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 225 QRREILHSCCGCRKPKIPGNALECHEYIEDENVEFPT 335
+RR LH +P ECHE I++E+V+ P+
Sbjct: 79 KRRIWLHGVLRFHRPLHLFQTSECHELIQEESVKSPS 115
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 1.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 172 PWQEWSDHYTCHRYRCEIRDG 234
P+Q+W D+Y C Y +R G
Sbjct: 478 PYQKWVDNYFCEDYLSAVRRG 498
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 366 VNGERIVQTRGQ--PCELFPGKPWEGQQNGPNPGVVGISGIQQTP 494
VNG + G P ++PG P + GP PG G++ P
Sbjct: 495 VNGRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGPVP 539
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/39 (25%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 169 QPWQEWSDHYTCHRYR-CEIRDGKYFIAAVDVENQKYRE 282
+ +++W+ T + +R C+ D ++F+ A +N+KY++
Sbjct: 97 EAYEDWNKDETDYLFRLCKDYDLRFFVIADRYDNEKYKK 135
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 217 CEIRDGKYFIAAVDVENQKYRET 285
C I DG F+ +++ +N+ Y+ET
Sbjct: 535 CSISDGYSFVTSLEKKNRYYQET 557
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.2 bits (55), Expect = 2.7
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +1
Query: 226 RDGKYFIAAVDVENQKYRETHWNATNTSKMR--MSNSPRAVRDCVASSK*MGRE*CKPEG 399
RDGKY IAA+ E KY T W++ M+ ++++ VR +AS M E C
Sbjct: 1514 RDGKYAIAALFYE--KYDST-WSSYVEDSMKNFLNDNTMCVRSFLASE--MDGE-CVCCA 1567
Query: 400 NLANC 414
+ ANC
Sbjct: 1568 SFANC 1572
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 2.7
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +1
Query: 226 RDGKYFIAAVDVENQKYRETHWNATNTSKMR--MSNSPRAVRDCVASSK*MGRE*CKPEG 399
RDGKY IAA+ E KY T W++ M+ ++++ VR +AS M E C
Sbjct: 1514 RDGKYAIAALFYE--KYDST-WSSYVEDSMKNFLNDNTMCVRSFLASE--MDGE-CVCCA 1567
Query: 400 NLANC 414
+ ANC
Sbjct: 1568 SFANC 1572
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 409 SQGCPLVCTILSPFTSTTQRNRAQHVGNSTFSSSMYSW 296
++GC L C ILSP R R HV + T +SW
Sbjct: 375 ARGCALSCAILSP----VFRVREFHVHDVTTYPITFSW 408
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 201 VPPLQMRDQRREILHSCCGCRKPKIPGN 284
VPP +QRR + +C CR+ KI N
Sbjct: 27 VPP----EQRRRVFRACKHCRQKKIKCN 50
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 192 SLHVPPLQMRDQRREILHSCC 254
S+HVPPL + + EI S C
Sbjct: 848 SIHVPPLNVPNAEGEIEESVC 868
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 367 TSTTQRNRAQHVGNSTFSSSMYSWHSSAFPGI 272
TS+ + H G + +SS++ SAFPG+
Sbjct: 229 TSSAAHPGSFHKGTNDYSSTLAGNEHSAFPGL 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,070
Number of Sequences: 5004
Number of extensions: 48706
Number of successful extensions: 153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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