Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0114
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   3.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   7.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 445 FCCPSHGLPGNSSQG 401
           +CC + G PG+SS G
Sbjct: 14  WCCDNLGGPGSSSAG 28


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 399 QPCELFPGKPWEGQQ 443
           QPC L P   W G+Q
Sbjct: 37  QPCILKPKPLWTGKQ 51


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 226 RDGKYFIAAVDVENQKYRETHWNATNTSKMRMSNS 330
           R+GK    +  +EN+   E++ ++T T   R S +
Sbjct: 212 RNGKRKRKSSTIENESETESNASSTKTKMRRKSGA 246


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 275 YFWFSTSTAAMKYFPSLI 222
           Y WF+TS    + F  LI
Sbjct: 549 YIWFTTSGTISEKFRKLI 566


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 275 YFWFSTSTAAMKYFPSLI 222
           Y WF+TS    + F  LI
Sbjct: 602 YIWFTTSGTISEKFRKLI 619


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,794
Number of Sequences: 438
Number of extensions: 3748
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)