Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0113
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 103 1e-23
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 103 1e-23
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 3.2
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 4.2
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 4.2
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 25 9.7
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 25 9.7
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 25 9.7
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 103 bits (248), Expect = 1e-23
Identities = 44/54 (81%), Positives = 47/54 (87%)
Frame = +1
Query: 256 TSAESWGTGRAVARIPRVRGXGTHRSGXGAFGNMCRGGRMFAPTKPWRRWHRRV 417
TSAESWGTGRA+ARIPRV G GTHRSG AFGNMCR GRMFAPTK WR+WH +V
Sbjct: 62 TSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKV 115
Score = 79.0 bits (186), Expect = 4e-16
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +2
Query: 71 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 251 HQ 256
HQ
Sbjct: 60 HQ 61
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 103 bits (248), Expect = 1e-23
Identities = 44/54 (81%), Positives = 47/54 (87%)
Frame = +1
Query: 256 TSAESWGTGRAVARIPRVRGXGTHRSGXGAFGNMCRGGRMFAPTKPWRRWHRRV 417
TSAESWGTGRA+ARIPRV G GTHRSG AFGNMCR GRMFAPTK WR+WH +V
Sbjct: 62 TSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKV 115
Score = 79.8 bits (188), Expect = 2e-16
Identities = 37/62 (59%), Positives = 46/62 (74%)
Frame = +2
Query: 71 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 250
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 251 HQ 256
HQ
Sbjct: 60 HQ 61
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 132 APCTVSLFSEYTDTKGRATDRLISLL 55
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 70 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 180
SI SP+ SVG + D + S + P+ I G + P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 145 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 240
PV +QG HT G +F Q L A +L Q
Sbjct: 29 PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 24.6 bits (51), Expect = 9.7
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +1
Query: 223 ALLREQGGWSPTSAESWGTGRAVARIPRVRGXGTHRSGXGAFGNMCRGGRMFAP-TKPWR 399
AL R G + TG+ ++P S G G + GGR+ P K R
Sbjct: 124 ALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGR 183
Query: 400 RWHR-RVK 420
+H+ RVK
Sbjct: 184 AFHKYRVK 191
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 24.6 bits (51), Expect = 9.7
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +1
Query: 223 ALLREQGGWSPTSAESWGTGRAVARIPRVRGXGTHRSGXGAFGNMCRGGRMFAP-TKPWR 399
AL R G + TG+ ++P S G G + GGR+ P K R
Sbjct: 124 ALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGR 183
Query: 400 RWHR-RVK 420
+H+ RVK
Sbjct: 184 AFHKYRVK 191
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 24.6 bits (51), Expect = 9.7
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +1
Query: 223 ALLREQGGWSPTSAESWGTGRAVARIPRVRGXGTHRSGXGAFGNMCRGGRMFAP-TKPWR 399
AL R G + TG+ ++P S G G + GGR+ P K R
Sbjct: 124 ALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGR 183
Query: 400 RWHR-RVK 420
+H+ RVK
Sbjct: 184 AFHKYRVK 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,192
Number of Sequences: 5004
Number of extensions: 40988
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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