Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0111
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.12 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.0  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   6.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 506  WHPPXSPKSEKSTLTE 553
            WHPP  P SEK  L E
Sbjct: 1374 WHPPIPPTSEKPPLPE 1389



 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 106  NQIGAKFWEIISDXHGIDPTGAYHGDSDLQLERINVYYNEA 228
            N+I  + W +  D  G     AYHGD  +  E I    ++A
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKA 951


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 415  STSFERKRNRVIASRDSN*HTRSGGXTGSCMAPS 516
            ST+ +RK    + +  S   + SG  TG  +APS
Sbjct: 948  STNGDRKPGGSLGALSSMFDSLSGNNTGDALAPS 981


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 405 DSVIDVVRKEAESCDCLQGF 464
           D V    RK AE C  LQGF
Sbjct: 233 DVVASNSRKTAEMCYKLQGF 252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,141
Number of Sequences: 336
Number of extensions: 2062
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)