Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0110
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    54   1e-08
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    49   6e-07
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    31   0.21 
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    29   0.48 
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    28   1.1  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   4.5  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 31/79 (39%), Positives = 46/79 (58%)
 Frame = +2

Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRH 418
           S K  I SP++    GPY+QAI A+  +Y SG + +  + +++ G    QTRQ L NL+ 
Sbjct: 37  STKTPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQE 94

Query: 419 VLEAGGASLESVVKTTVLL 475
           VL   G+SL  +VK  + L
Sbjct: 95  VLTEAGSSLNKIVKVNIFL 113


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 24/64 (37%), Positives = 37/64 (57%)
 Frame = +2

Query: 284 GPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKT 463
           GPY+QA+ +   ++ SG   + +D   V G  + QTR  ++NL  VL   G+SLE +VK 
Sbjct: 15  GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73

Query: 464 TVLL 475
            + L
Sbjct: 74  NIFL 77


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +2

Query: 281 VGPYSQAILADKTLYISGILGL 346
           +GPYSQ+I A+  ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
 Frame = +1

Query: 259 ISGNISTSRSVQSSNFSGQDLIHFWNSRIGSRCTDGLRWC*SADPSGSGQSATCT*---S 429
           I+  IS  R++  +  +  D + F+ SRIG+   +       A  S + +  T T    +
Sbjct: 256 ITPEISAIRTILINKNTHPDDLQFFLSRIGTMLMN------LAGDSLAYEKKTITLHNGN 309

Query: 430 WWRFVGVGRENYCFVGLAWTTSKLSTSLCRIFPKXCPARMTYEVSRL 570
            W  + + +E  C V +  +   L T+LCR FP  C  ++  +++++
Sbjct: 310 QWEGLQMAKE-LCGVSVLRSGGTLETALCRQFPTVCLGKILVQINKV 355


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 368 CGGAEAQTRQALDNLRHVLEAGGASLESVVK 460
           C G +  T++ +D LR  ++AGG   E  +K
Sbjct: 88  CRGNQLMTQEEIDELRANIKAGGLRAEEAIK 118


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 439 FVGVGRENYCFVGLAWTTSKLSTSLC 516
           FV + R N C+ G   T +++S+SLC
Sbjct: 71  FVAI-RNNQCYCGSTLTATEVSSSLC 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,113
Number of Sequences: 5004
Number of extensions: 57017
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)