Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0109
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   2.7  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    26   3.6  

>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 100 CSRHRNYSSNRHFLLEII*IPDRTRRNSLFS 8
           CSR    S+N+ FLL +I + D+   NSL S
Sbjct: 790 CSRAFVDSANQKFLLRLIKLMDQLMSNSLVS 820


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 110 YNRSAPIIINNFQLLNQPRFTTITRL 187
           YN + P ++N+ Q+LN+ R + +  +
Sbjct: 213 YNETLPTLLNHMQVLNEYRVSNLNEI 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,871,029
Number of Sequences: 5004
Number of extensions: 34646
Number of successful extensions: 57
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)