Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0108
(498 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 4e-24
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.003
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 37 0.011
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 36 0.019
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 34 0.057
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 34 0.057
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.099
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 33 0.17
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.17
SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 30 1.2
SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16) 29 1.6
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 2.1
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 29 2.1
SB_2108| Best HMM Match : DUF702 (HMM E-Value=4.7) 29 2.1
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 29 2.8
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 28 4.9
SB_20454| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02) 27 6.5
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 27 6.5
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 27 8.6
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 107 bits (258), Expect = 4e-24
Identities = 53/91 (58%), Positives = 60/91 (65%)
Frame = +1
Query: 94 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSX 273
R PP IDGM SLKVDNLTYRTT EDL++VF++ G++GDIYIPRDR T ESRGFA F
Sbjct: 7 RGPPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYE 66
Query: 274 VVTLKKPWTRWTDECXTAGNFAFRWRDMVAP 366
+ C A F FRWRDMV P
Sbjct: 67 KRDAEDAMDCMDATCLMAEKFVFRWRDMVVP 97
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
V NL Y T DL +VFER G+V + I RD+ TRESRG A
Sbjct: 14 VGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVA 54
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 38.3 bits (85), Expect = 0.003
Identities = 24/56 (42%), Positives = 29/56 (51%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSXVVTLKK 291
SL V NL+Y TT + L FE C I+ DR + ESRGF + V T KK
Sbjct: 290 SLIVRNLSYDTTTDSLGAAFEGCSNAKVIF---DRESGESRGFGFVDYDDVETAKK 342
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
D L V L TT E LR FE GE+ D+ + D T++SRGF
Sbjct: 11 DPRAKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGF 57
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 36.7 bits (81), Expect = 0.011
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
D + L V L+Y TT E L+ F + GE+ + I D T RGFA
Sbjct: 26 DDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFA 73
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 35.9 bits (79), Expect = 0.019
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 151 RTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
R ED+R FE+ G + D+++ +D+ T+E+RG
Sbjct: 33 RHNAEDIRSAFEQYGTIEDVWVVKDKATKENRG 65
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 34.3 bits (75), Expect = 0.057
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
D S+ + NL + E LR +F CG V + + RDR T +GF
Sbjct: 53 DHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGF 99
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 34.3 bits (75), Expect = 0.057
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +1
Query: 73 LLKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+L + YG + L V LT + + E LR+ FE+ GE+ + + RD T+ SRGF
Sbjct: 95 ILDIDYGTS--HFSSTLELSVIPLT-QASAEGLRQHFEKFGELKECVVMRDPVTKRSRGF 151
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 33.5 bits (73), Expect = 0.099
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 160 PEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
P DL F + G+V D+ I DR +R S+G A
Sbjct: 159 PRDLEEFFSKVGQVSDVRIISDRNSRRSKGIA 190
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L V L Y TT +++ F R GE+ + D TR SRGF
Sbjct: 117 LIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGF 158
Score = 31.5 bits (68), Expect = 0.40
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 73 LLKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 222
L ++ RP ++ L V L TT + L F + GEV D+YIP+
Sbjct: 183 LCEVRLPRPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPK 232
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 163 EDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
EDLR FE G++ + I RD TRE++G+
Sbjct: 67 EDLRSKFESFGDIEYVQIVRDHKTRENKGY 96
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 32.7 bits (71), Expect = 0.17
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L V + Y + + LR+ F + GE+ + + +DR T++S+G+
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGY 53
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+L VDNL+ T D+ R F G+V ++I DR T +S+G
Sbjct: 320 TLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKG 361
Score = 31.1 bits (67), Expect = 0.53
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDI 210
L V +L + TT ++LR FE+CGE+ I
Sbjct: 238 LMVQDLDFDTTVDELREYFEKCGELTGI 265
>SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 30.7 bits (66), Expect = 0.70
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +1
Query: 121 VSLKVDNLTYR--TTPEDLRRVFERCGEVGDI-YIPRDR 228
+S+K +N R T E+L +FE CG+V D ++P+DR
Sbjct: 147 LSVKYNNDKTRESVTEEELTSMFEDCGDVADFRFLPKDR 185
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
L V +LT + ++ +F G V + +P DR SRGFA
Sbjct: 1159 LYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFA 1201
>SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16)
Length = 193
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -1
Query: 396 CDRNDSCMAMRGDHIAPSEREVP--CRXTFVRPSCP 295
C+ +D C G+ P E E P CR T + SCP
Sbjct: 27 CNSDDKCSP--GERCRPQENECPLKCRKTIKKKSCP 60
>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2286
Score = 29.1 bits (62), Expect = 2.1
Identities = 26/95 (27%), Positives = 39/95 (41%)
Frame = +1
Query: 40 FNLFDLS*ISILLKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 219
F+L DL + + L + R P IDG S ++ +T + G V +Y+
Sbjct: 98 FSLEDLFPVRLDLTAA-NRSPIAIDGAFSARLSTITRDGEAVSCSSMVYVSGSVQAMYLS 156
Query: 220 RDRYTRESRGFAS*GFSXVVTLKKPWTRWTDECXT 324
+ +RG S GF LK P TD+ T
Sbjct: 157 YESML--NRGILSHGFPSAEPLKNPSDEHTDDSAT 189
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 222
+L V N+ TT DL+ FER GEV D+ I +
Sbjct: 250 TLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKK 282
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRE 240
L V L+ TT DLR VFE+ G V I I D +E
Sbjct: 183 LGVFGLSLYTTERDLRPVFEKYGPVEAIQIVYDHQAKE 220
>SB_2108| Best HMM Match : DUF702 (HMM E-Value=4.7)
Length = 297
Score = 29.1 bits (62), Expect = 2.1
Identities = 26/95 (27%), Positives = 39/95 (41%)
Frame = +1
Query: 40 FNLFDLS*ISILLKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 219
F+L DL + + L + R P IDG ++ +T R + G V +Y+
Sbjct: 152 FSLEDLFPVRLDLTAA-NRSPIAIDGAFFARLSTITRDGEAVSCRSMVYVSGSVQAMYLS 210
Query: 220 RDRYTRESRGFAS*GFSXVVTLKKPWTRWTDECXT 324
+ +RG S GF LK P TD+ T
Sbjct: 211 YESML--NRGILSHGFPSAEPLKNPSDEHTDDSAT 243
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
D +L ++ + + ED++++F G V + RDR T +S G+A
Sbjct: 24 DERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYA 71
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 91 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESR 246
G R V L V + +DLR +FE G++ ++ I +D+YT + +
Sbjct: 160 GTTSVRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHK 211
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
TT EDL +F R G + + RD+ T ES +A
Sbjct: 131 TTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYA 164
>SB_20454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 76 LKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
LK + GR P D + + D+ + DLR RCG +P D+ R ++G
Sbjct: 485 LKQTGGRIPENKDSLGRDRRDSCGTKEL-RDLRDAIRRCGVTDSPTVPDDKGKRNAKG 541
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 76 LKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCG 195
+K+S+ R P+I S V T TTPE+LR++ E G
Sbjct: 1522 MKLSF-RTGPQIGRTKSGFVATYTSGTTPEELRKISENAG 1560
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +1
Query: 109 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
++G + L V N+ +D+ +F GE+ ++++ DR T +G+A
Sbjct: 290 VEGWI-LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYA 337
>SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02)
Length = 376
Score = 27.5 bits (58), Expect = 6.5
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +1
Query: 115 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR-DRYTRESRGFAS*GFSXVVTLKK 291
G LK+ LT TP D+ R G+ D IPR R + RG +KK
Sbjct: 155 GRRQLKISLLTEPDTPVDIARARSPRGQEQDPKIPRGQRQNQTPRGQRQSKIPSQRHIKK 214
Query: 292 -PWT 300
PWT
Sbjct: 215 LPWT 218
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 136 DNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+ L + + L++VF G+V + +PR ++ E +GFA
Sbjct: 93 EKLPFHADHDWLKKVFSEFGKVLYVSLPRFKHNGEIKGFA 132
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 88 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEV 201
YG PP R + S+ V+NL+ RT+ +DL+ F + G+V
Sbjct: 790 YG-PPVRTN--YSVIVENLSSRTSWQDLKDYFRKYGKV 824
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,947,976
Number of Sequences: 59808
Number of extensions: 234495
Number of successful extensions: 553
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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