Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0104
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 146 3e-36
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 87 2e-18
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 86 4e-18
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 58 1e-09
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 28 1.2
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 28 1.2
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 27 2.7
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 27 3.5
SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces pom... 26 4.7
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 26 6.2
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 146 bits (354), Expect = 3e-36
Identities = 82/179 (45%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
+G+TT RFPG+LN+DLRKLAVNMVPFPRLHF+ GFAPL + G+ ++A++VPELT QM
Sbjct: 234 AGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQM 293
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTKTARILSSGYPITARLPC 361
FDA NMMVA DPRHGRYLTVA +FRG+ K++ R +TK + P
Sbjct: 294 FDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAV 353
Query: 362 VTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWLCLGGKLLALVHW---*GYDEMEFTE 529
+ LK + + R L + + + A +HW G DEMEFTE
Sbjct: 354 CSVPPKDLKMSATFIGNSTSIQEIFRR-LGDQFSAM-FRRKAFLHWYTGEGMDEMEFTE 410
Score = 132 bits (320), Expect = 4e-32
Identities = 63/111 (56%), Positives = 81/111 (72%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQTI 432
+G++SMKEVDEQ+ ++Q KNS YFVEWIP+N AVC +PP+ LKM++TFIGN+T+IQ I
Sbjct: 318 RGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEI 377
Query: 433 FKRVSEQFVAMFRRKASCTGTLVRV**NGVHGRQSSNMNDLISEYQQYQDA 585
F+R+ +QF AMFRRKA SNMNDL+SEYQQYQ+A
Sbjct: 378 FRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEA 428
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 87.0 bits (206), Expect = 2e-18
Identities = 38/89 (42%), Positives = 54/89 (60%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
S IT LRF G LN DL + N+VP+PR+HF +AP+ S + + +V E+T Q
Sbjct: 236 SSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQC 295
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL 268
F+ N MV CDPR GRY+ ++RG+ +
Sbjct: 296 FEPYNQMVKCDPRAGRYMATCLLYRGDVI 324
Score = 45.6 bits (103), Expect = 7e-06
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLK--------MASTFIG 408
+G + ++V + I+ K + FV+W P KI +CD PP+ ++ A +
Sbjct: 320 RGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLS 379
Query: 409 NTTAIQTIFKRVSEQFVAMFRRKA 480
NTT+I + R+ +F M+ ++A
Sbjct: 380 NTTSIAEAWSRLDHKFDLMYSKRA 403
Score = 26.6 bits (56), Expect = 3.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 477 SFLHWYTGEGM 509
+F+HWY GEGM
Sbjct: 403 AFVHWYVGEGM 413
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 86.2 bits (204), Expect = 4e-18
Identities = 37/89 (41%), Positives = 54/89 (60%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
S IT LRF G LN DL + N+VP+PR+HF ++P+ S + + +V E+T Q
Sbjct: 240 SSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQC 299
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL 268
F+ N MV CDPR GRY+ ++RG+ +
Sbjct: 300 FEPYNQMVKCDPRTGRYMATCLLYRGDVI 328
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPR--------GLKMASTFIG 408
+G + ++V + +I+++ + FV+W P KI +C PP+ + A +
Sbjct: 324 RGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLS 383
Query: 409 NTTAIQTIFKRVSEQFVAMFRRKA 480
NTT+I + R+ +F M+ ++A
Sbjct: 384 NTTSIAEAWSRLDHKFDLMYSKRA 407
Score = 26.6 bits (56), Expect = 3.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 477 SFLHWYTGEGM 509
+F+HWY GEGM
Sbjct: 407 AFVHWYVGEGM 417
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 58.0 bits (134), Expect = 1e-09
Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRAL---TVPELT 172
S TT LR+PG +N DL + +++P PR HF + P T++ ++ +A+ TV ++
Sbjct: 237 SASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVM 296
Query: 173 LQMFDAKNMMVACDP-RHGRYLTVATIFRGE 262
++ KN MV+ +P + ++++ I +GE
Sbjct: 297 RRLLLPKNQMVSVNPSKKSCFISILDIIQGE 327
Score = 40.3 bits (90), Expect = 3e-04
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Frame = +1
Query: 244 DDIQGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP---RGLKMASTFIGNT 414
D IQG +V + L I+ + F+ W P + ++A+ P +++ + N
Sbjct: 322 DIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANH 381
Query: 415 TAIQTIFKRVSEQFVAMFRRKASCTG-TLVRV**NGVHGRQSSN--MNDLISEYQQYQDA 585
T+I ++FKR +Q+ + +R A + + ++ SS + DLI+EY+ +D
Sbjct: 382 TSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYEACEDP 441
Query: 586 N 588
N
Sbjct: 442 N 442
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 145 SSFNCTRADAANVRRQKHDGRV*SSTREVFDRCDDIQGRMSMKEVDEQLANIQNK 309
S+ N R D + + + STR DR D G S++E+D+Q +N+
Sbjct: 253 SANNSMRDDKKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEEIDKQRKEFENR 307
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 296 FASCSSTSFIDIRP*ISSQRSNTSRVEDHTRPSCFWRRTFAASARVQL 153
F+ C T I P + N + + D ++ FW++ F ASA V L
Sbjct: 25 FSKCHRTVTTKILPIVEKYAKNCNTIWDSSK---FWKQFFEASANVSL 69
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 290 WRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLRPSL--VTRRPYRPYSRGCLSSSWL 463
+R+ K+ ++++ GYP R+P V L+ +L+ + V PY S S +W+
Sbjct: 208 FRLRSQKSDKVMNKGYPFGYRIPSVGQLQLILRQTNGLVIKVFLVPYNVSSMVDCSKTWI 267
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = -1
Query: 528 SVNSISSYPHQCTSARSFPPKHSHELLRHPLEYGLYGRRVTNEGRSHFKTPRRY 367
++N S++ H P + + LR+P +YG GR+ + + + RY
Sbjct: 458 AMNQTSNHSHADGQRYYRPEQDRSQRLRNPSDYGRQGRQSSQSQQPAWNVSSRY 511
>SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 236
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 239 VATIFRGECL*KKLTSNWRIFRTKTARILSSG 334
+ + +R ECL +L ++ + RT+ A I S+G
Sbjct: 117 LTSTYRSECLLYELLDSFGVSRTRVAAIASTG 148
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/46 (21%), Positives = 20/46 (43%)
Frame = -1
Query: 552 IIHVGTLPSVNSISSYPHQCTSARSFPPKHSHELLRHPLEYGLYGR 415
++ + L S + YP C S+ + H ++ HP + + R
Sbjct: 377 LLALNNLVSAGIVQDYPPLCDIRGSYTAQFEHTIILHPTQKEVVSR 422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,974
Number of Sequences: 5004
Number of extensions: 59180
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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