Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0104
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 159 2e-39
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 157 5e-39
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 157 7e-39
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 157 9e-39
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 157 9e-39
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 157 9e-39
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 157 9e-39
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 151 3e-37
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 151 5e-37
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 95 4e-20
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 95 5e-20
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 95 5e-20
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 88 6e-18
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 88 6e-18
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 88 6e-18
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 88 6e-18
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 63 2e-10
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 63 2e-10
At3g21720.1 68416.m02740 isocitrate lyase, putative similar to i... 31 0.76
At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase fa... 30 1.3
At5g37280.1 68418.m04478 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At1g44900.1 68414.m05144 DNA replication licensing factor, putat... 27 9.4
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 159 bits (385), Expect = 2e-39
Identities = 87/179 (48%), Positives = 109/179 (60%), Gaps = 3/179 (1%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
SG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYRALTVPELT QM
Sbjct: 234 SGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQM 293
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTKTARILSSGYPITARLPC 361
+DAKNMM A DPRHGRYLT + +FRG+ K++ + K + P +
Sbjct: 294 WDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTV 353
Query: 362 VTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWLCLGGKLLALVHW---*GYDEMEFTE 529
LK + + R +S + + + A +HW G DEMEFTE
Sbjct: 354 CDIPPTGLKMASTFIGNSTSIQEMFRR-VSEQFTAM-FRRKAFLHWYTGEGMDEMEFTE 410
Score = 152 bits (369), Expect = 2e-37
Identities = 74/111 (66%), Positives = 84/111 (75%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQTI 432
+G+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ +
Sbjct: 318 RGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEM 377
Query: 433 FKRVSEQFVAMFRRKASCTGTLVRV**NGVHGRQSSNMNDLISEYQQYQDA 585
F+RVSEQF AMFRRKA SNMNDL+SEYQQYQDA
Sbjct: 378 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 157 bits (382), Expect = 5e-39
Identities = 85/179 (47%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
SG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY AL+VPELT QM
Sbjct: 234 SGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQM 293
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTKTARILSSGYPITARLPC 361
+DAKNMM A DPRHGRYLT + +FRG+ K++ + K + P +
Sbjct: 294 WDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSV 353
Query: 362 VTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWLCLGGKLLALVHW---*GYDEMEFTE 529
LK + + R +S + + + A +HW G DEMEFTE
Sbjct: 354 CDIAPKGLKMASTFIGNSTSIQEMFRR-VSEQFTAM-FRRKAFLHWYTGEGMDEMEFTE 410
Score = 149 bits (360), Expect = 2e-36
Identities = 72/111 (64%), Positives = 85/111 (76%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQTI 432
+G++S KEVDEQ+ NIQNKNS+YFVEWIPNN K +VCDI P+GLKMASTFIGN+T+IQ +
Sbjct: 318 RGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVCDIAPKGLKMASTFIGNSTSIQEM 377
Query: 433 FKRVSEQFVAMFRRKASCTGTLVRV**NGVHGRQSSNMNDLISEYQQYQDA 585
F+RVSEQF AMFRRKA SNMNDL++EYQQYQDA
Sbjct: 378 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDA 428
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 157 bits (381), Expect = 7e-39
Identities = 85/179 (47%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
SG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY AL+VPELT QM
Sbjct: 234 SGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQM 293
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTKTARILSSGYPITARLPC 361
+DAKNMM A DPRHGRYLT + +FRG+ K++ + K + P +
Sbjct: 294 WDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSV 353
Query: 362 VTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWLCLGGKLLALVHW---*GYDEMEFTE 529
LK + + R +S + + + A +HW G DEMEFTE
Sbjct: 354 CDIAPTGLKMASTFIGNSTSIQEMFRR-VSEQFTAM-FRRKAFLHWYTGEGMDEMEFTE 410
Score = 148 bits (359), Expect = 3e-36
Identities = 72/111 (64%), Positives = 84/111 (75%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQTI 432
+G+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K +VCDI P GLKMASTFIGN+T+IQ +
Sbjct: 318 RGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAPTGLKMASTFIGNSTSIQEM 377
Query: 433 FKRVSEQFVAMFRRKASCTGTLVRV**NGVHGRQSSNMNDLISEYQQYQDA 585
F+RVSEQF AMFRRKA SNMNDL++EYQQYQDA
Sbjct: 378 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDA 428
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 157 bits (380), Expect = 9e-39
Identities = 85/179 (47%), Positives = 109/179 (60%), Gaps = 3/179 (1%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
SG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYR+LTVPELT QM
Sbjct: 234 SGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQM 293
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTKTARILSSGYPITARLPC 361
+D+KNMM A DPRHGRYLT + +FRG+ K++ + K + P +
Sbjct: 294 WDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTV 353
Query: 362 VTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWLCLGGKLLALVHW---*GYDEMEFTE 529
LK + + R +S + + + A +HW G DEMEFTE
Sbjct: 354 CDIPPTGLKMASTFIGNSTSIQEMFRR-VSEQFTAM-FRRKAFLHWYTGEGMDEMEFTE 410
Score = 152 bits (369), Expect = 2e-37
Identities = 74/111 (66%), Positives = 84/111 (75%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQTI 432
+G+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ +
Sbjct: 318 RGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEM 377
Query: 433 FKRVSEQFVAMFRRKASCTGTLVRV**NGVHGRQSSNMNDLISEYQQYQDA 585
F+RVSEQF AMFRRKA SNMNDL+SEYQQYQDA
Sbjct: 378 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 157 bits (380), Expect = 9e-39
Identities = 85/179 (47%), Positives = 109/179 (60%), Gaps = 3/179 (1%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
SG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYR+LTVPELT QM
Sbjct: 234 SGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQM 293
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTKTARILSSGYPITARLPC 361
+D+KNMM A DPRHGRYLT + +FRG+ K++ + K + P +
Sbjct: 294 WDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTV 353
Query: 362 VTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWLCLGGKLLALVHW---*GYDEMEFTE 529
LK + + R +S + + + A +HW G DEMEFTE
Sbjct: 354 CDIPPTGLKMASTFIGNSTSIQEMFRR-VSEQFTAM-FRRKAFLHWYTGEGMDEMEFTE 410
Score = 152 bits (369), Expect = 2e-37
Identities = 74/111 (66%), Positives = 84/111 (75%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQTI 432
+G+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ +
Sbjct: 318 RGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEM 377
Query: 433 FKRVSEQFVAMFRRKASCTGTLVRV**NGVHGRQSSNMNDLISEYQQYQDA 585
F+RVSEQF AMFRRKA SNMNDL+SEYQQYQDA
Sbjct: 378 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 157 bits (380), Expect = 9e-39
Identities = 88/180 (48%), Positives = 111/180 (61%), Gaps = 4/180 (2%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
SG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYRALTVPELT QM
Sbjct: 234 SGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQM 293
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTKTARILSSGYPITARLP- 358
+D+KNMM A DPRHGRYLT + +FRG+ K++ + K + P +
Sbjct: 294 WDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV 353
Query: 359 CVTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWLCLGGKLLALVHW---*GYDEMEFTE 529
C RG L + + R +S + + + A +HW G DEMEFTE
Sbjct: 354 CDIAPRG-LSMASTFIGNSTSIQEMFRR-VSEQFTAM-FRRKAFLHWYTGEGMDEMEFTE 410
Score = 150 bits (363), Expect = 1e-36
Identities = 73/111 (65%), Positives = 84/111 (75%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQTI 432
+G+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K +VCDI PRGL MASTFIGN+T+IQ +
Sbjct: 318 RGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEM 377
Query: 433 FKRVSEQFVAMFRRKASCTGTLVRV**NGVHGRQSSNMNDLISEYQQYQDA 585
F+RVSEQF AMFRRKA SNMNDL+SEYQQYQDA
Sbjct: 378 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 157 bits (380), Expect = 9e-39
Identities = 86/179 (48%), Positives = 108/179 (60%), Gaps = 3/179 (1%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
SG+T CLRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQYR LTVPELT QM
Sbjct: 234 SGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQM 293
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTKTARILSSGYPITARLPC 361
+DAKNMM A DPRHGRYLT + +FRG+ K++ + K + P +
Sbjct: 294 WDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTV 353
Query: 362 VTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWLCLGGKLLALVHW---*GYDEMEFTE 529
LK + + R +S + + + A +HW G DEMEFTE
Sbjct: 354 CDIPPTGLKMASTFIGNSTSIQEMFRR-VSEQFTAM-FRRKAFLHWYTGEGMDEMEFTE 410
Score = 152 bits (369), Expect = 2e-37
Identities = 74/111 (66%), Positives = 84/111 (75%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQTI 432
+G+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K VCDIPP GLKMASTFIGN+T+IQ +
Sbjct: 318 RGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEM 377
Query: 433 FKRVSEQFVAMFRRKASCTGTLVRV**NGVHGRQSSNMNDLISEYQQYQDA 585
F+RVSEQF AMFRRKA SNMNDL+SEYQQYQDA
Sbjct: 378 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 151 bits (367), Expect = 3e-37
Identities = 72/111 (64%), Positives = 85/111 (76%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQTI 432
+G+MS KEVDEQ+ N+QNKNS+YFVEWIPNN K +VCDIPP G+KMASTF+GN+T+IQ +
Sbjct: 319 RGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQEM 378
Query: 433 FKRVSEQFVAMFRRKASCTGTLVRV**NGVHGRQSSNMNDLISEYQQYQDA 585
F+RVSEQF AMFRRKA SNMNDL+SEYQQYQDA
Sbjct: 379 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 429
Score = 149 bits (360), Expect = 2e-36
Identities = 83/179 (46%), Positives = 107/179 (59%), Gaps = 3/179 (1%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
SG+T LRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY +LTVPELT QM
Sbjct: 235 SGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQM 294
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTKTARILSSGYPITARLPC 361
+DAKNMM A DPRHGRYLT + +FRG+ K++ + K + P +
Sbjct: 295 WDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSV 354
Query: 362 VTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWLCLGGKLLALVHW---*GYDEMEFTE 529
+K + + R +S + + + A +HW G DEMEFTE
Sbjct: 355 CDIPPTGIKMASTFVGNSTSIQEMFRR-VSEQFTAM-FRRKAFLHWYTGEGMDEMEFTE 411
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 151 bits (366), Expect = 5e-37
Identities = 72/111 (64%), Positives = 86/111 (77%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQTI 432
+G+MS KEVDEQ+ NIQNKNS+YFVEWIPNN K +VCDIPP+GLKMA+TF+GN+T+IQ +
Sbjct: 319 RGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAATFVGNSTSIQEM 378
Query: 433 FKRVSEQFVAMFRRKASCTGTLVRV**NGVHGRQSSNMNDLISEYQQYQDA 585
F+RVSEQF AMFRRKA SNMNDL++EYQQYQDA
Sbjct: 379 FRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDA 429
Score = 150 bits (364), Expect = 8e-37
Identities = 84/179 (46%), Positives = 107/179 (59%), Gaps = 3/179 (1%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
SG+T LRFPGQLN+DLRKLAVN++PFPRLHF+ GFAPLTSRG+QQY +LTVPELT QM
Sbjct: 235 SGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQM 294
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTKTARILSSGYPITARLPC 361
+D+KNMM A DPRHGRYLT + IFRG+ K++ + K + P +
Sbjct: 295 WDSKNMMCAADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSV 354
Query: 362 VTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWLCLGGKLLALVHW---*GYDEMEFTE 529
LK + + R +S + + + A +HW G DEMEFTE
Sbjct: 355 CDIPPKGLKMAATFVGNSTSIQEMFRR-VSEQFTAM-FRRKAFLHWYTGEGMDEMEFTE 411
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 95.1 bits (226), Expect = 4e-20
Identities = 37/95 (38%), Positives = 59/95 (62%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
S +TT LRF G +N D+ + N+VP+PR+HF +AP+ S + +VPE+T +
Sbjct: 236 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSV 295
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTS 286
F+ NMM CDPRHG+Y+ ++RG+ + K + +
Sbjct: 296 FEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNT 330
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Frame = +1
Query: 241 CDDIQGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP--------RGLKMAS 396
C +G + K+V+ +A I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAV 375
Query: 397 TFIGNTTAIQTIFKRVSEQFVAMFRRKA 480
I N TA+ +F R+ +F M+ ++A
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMYSKRA 403
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 94.7 bits (225), Expect = 5e-20
Identities = 39/103 (37%), Positives = 63/103 (61%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
S +TT LRF G +N D+ + N+VP+PR+HF +AP+ S + L+VPE+T +
Sbjct: 236 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAV 295
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTK 310
F+ +MM CDPRHG+Y+ ++RG+ + K + + +TK
Sbjct: 296 FEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Frame = +1
Query: 241 CDDIQGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP--------RGLKMAS 396
C +G + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 397 TFIGNTTAIQTIFKRVSEQFVAMFRRKA 480
I N TA+ +F R+ +F M+ ++A
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMYAKRA 403
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 94.7 bits (225), Expect = 5e-20
Identities = 39/103 (37%), Positives = 63/103 (61%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
S +TT LRF G +N D+ + N+VP+PR+HF +AP+ S + L+VPE+T +
Sbjct: 236 SSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAV 295
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTK 310
F+ +MM CDPRHG+Y+ ++RG+ + K + + +TK
Sbjct: 296 FEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Frame = +1
Query: 241 CDDIQGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP--------RGLKMAS 396
C +G + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 397 TFIGNTTAIQTIFKRVSEQFVAMFRRKA 480
I N TA+ +F R+ +F M+ ++A
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMYAKRA 403
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 87.8 bits (208), Expect = 6e-18
Identities = 38/103 (36%), Positives = 60/103 (58%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 236 SSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSA 295
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTK 310
F+ +MM CDPRHG+Y+ ++RG+ + K + + +TK
Sbjct: 296 FEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Frame = +1
Query: 241 CDDIQGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP--------RGLKMAS 396
C +G + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 397 TFIGNTTAIQTIFKRVSEQFVAMFRRKA 480
I N+T++ +F R+ +F M+ ++A
Sbjct: 376 CMISNSTSVAEVFSRIDHKFDLMYAKRA 403
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 87.8 bits (208), Expect = 6e-18
Identities = 38/103 (36%), Positives = 60/103 (58%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 236 SSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSA 295
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTK 310
F+ +MM CDPRHG+Y+ ++RG+ + K + + +TK
Sbjct: 296 FEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 241 CDDIQGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP 375
C +G + K+V+ + I+ K + FV+W P K + PP
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPP 360
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 87.8 bits (208), Expect = 6e-18
Identities = 38/103 (36%), Positives = 60/103 (58%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 236 SSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSA 295
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTK 310
F+ +MM CDPRHG+Y+ ++RG+ + K + + +TK
Sbjct: 296 FEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Frame = +1
Query: 241 CDDIQGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP--------RGLKMAS 396
C +G + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 397 TFIGNTTAIQTIFKRVSEQFVAMFRRKA 480
I N+T++ +F R+ +F M+ ++A
Sbjct: 376 CMISNSTSVAEVFSRIDHKFDLMYAKRA 403
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 87.8 bits (208), Expect = 6e-18
Identities = 38/103 (36%), Positives = 60/103 (58%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQM 181
S +T LRF G LN D+ + N+VP+PR+HF +AP+ S + L+V E+T
Sbjct: 236 SSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSA 295
Query: 182 FDAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTK 310
F+ +MM CDPRHG+Y+ ++RG+ + K + + +TK
Sbjct: 296 FEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTK 338
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Frame = +1
Query: 241 CDDIQGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP--------RGLKMAS 396
C +G + K+V+ + I+ K + FV+W P K + PP ++ A
Sbjct: 316 CLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV 375
Query: 397 TFIGNTTAIQTIFKRVSEQFVAMFRRKA 480
I N+T++ +F R+ +F M+ ++A
Sbjct: 376 CMISNSTSVAEVFSRIDHKFDLMYAKRA 403
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLT-SRGAQQYRALTVPELTLQ 178
S TT LR+PG +N DL L +++P PR HF G+ PLT R A R TV ++ +
Sbjct: 237 SASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRR 296
Query: 179 MFDAKNMMVACDPRH-----GRYLTVATIFRGE 262
+ KN+MV+ R+ +Y+++ I +GE
Sbjct: 297 LLQTKNIMVSSYARNKEASQAKYISILNIIQGE 329
Score = 37.1 bits (82), Expect = 0.012
Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Frame = +1
Query: 118 ADVARSSTVSSFNCTRADAANVRRQKHDGRV*SSTREVFDRCDDIQGRMSMKEVDEQLAN 297
A+V R +TV N+ + +S + + IQG + +V E L
Sbjct: 282 ANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQR 341
Query: 298 IQNKNSTYFVEWIPNNCKIAVCDIPP---RGLKMASTFIGNTTAIQTIFKRVSEQFVAMF 468
I+ + F++W P + ++A+ P +++ + + T+I+ +F R Q+ +
Sbjct: 342 IRERKLVNFIDWGPASIQVALSKKSPYVQTSHRVSGLMLASHTSIRHLFSRCLSQYDKLR 401
Query: 469 RRKA 480
+++A
Sbjct: 402 KKQA 405
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLT-SRGAQQYRALTVPELTLQ 178
S TT LR+PG +N DL L +++P PR HF G+ PLT R A R TV ++ +
Sbjct: 237 SASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRR 296
Query: 179 MFDAKNMMVACDPRH-----GRYLTVATIFRGE 262
+ KN+MV+ R+ +Y+++ I +GE
Sbjct: 297 LLQTKNIMVSSYARNKEASQAKYISILNIIQGE 329
Score = 37.1 bits (82), Expect = 0.012
Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Frame = +1
Query: 118 ADVARSSTVSSFNCTRADAANVRRQKHDGRV*SSTREVFDRCDDIQGRMSMKEVDEQLAN 297
A+V R +TV N+ + +S + + IQG + +V E L
Sbjct: 282 ANVIRKTTVLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQR 341
Query: 298 IQNKNSTYFVEWIPNNCKIAVCDIPP---RGLKMASTFIGNTTAIQTIFKRVSEQFVAMF 468
I+ + F+EW P + ++A+ P +++ + + T+I+ +F + Q+ +
Sbjct: 342 IRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYDKLR 401
Query: 469 RRKA 480
+++A
Sbjct: 402 KKQA 405
>At3g21720.1 68416.m02740 isocitrate lyase, putative similar to
isocitrate lyase GI:167144 from [Brassica napus]
Length = 576
Score = 31.1 bits (67), Expect = 0.76
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 265 TFAPEYRRNGQIPPVSRITRDHHVFGVEHLQRQ 167
TFA +Y R G + V RI R+ GV+ L Q
Sbjct: 485 TFAKDYARRGMLAYVERIQREERTHGVDTLAHQ 517
>At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to SP|Q9ZWQ9 Flavonol synthase
(EC 1.14.11.-) {Citrus unshiu}; contains Pfam profile
PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 364
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 106 RGVEMQARKRHHVHSQLPQISVQLSRKP 23
RGV + + K HH+H Q+P I + KP
Sbjct: 39 RGVVVSSLKTHHLHHQIPVIDLSKLSKP 66
>At5g37280.1 68418.m04478 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHA1b [Arabidopsis thaliana] GI:3790567; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 216
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -1
Query: 540 GTLPSVNSISSYPHQCTSARSFPPKHSHELLRHPL 436
GT P V S+S H RSF P+ LLR L
Sbjct: 44 GTTPVVASLSPISHVLLKPRSFLPEQLSRLLRRQL 78
>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
similar to DNA replication licensing factor MCM2 from
{Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 928
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +1
Query: 205 RV*SSTREVFDRCDDIQGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAV 360
R+ + RE R D+++ ++ K D L ++ KN +E++PN C + +
Sbjct: 200 RIQGTLREWVMR-DEVRRFIAKKFKDFLLTYVKPKNENGDIEYVPNKCSLEI 250
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,320,863
Number of Sequences: 28952
Number of extensions: 318813
Number of successful extensions: 937
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -