Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0100
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    30   0.25 
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    30   0.25 
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    27   2.3  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   4.1  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   9.4  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.4  

>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 478 IFASLDFFFKNFSTAATLLGFDALFDFPQLEHLAFDLVDIMDTALRQGR 332
           +  SLD F+K+ +       F+  +DF   E + +DL+ +    L+QGR
Sbjct: 51  VILSLDSFYKSLNAEQKKRAFNNDYDFDSPEAIDWDLLFVKLLELKQGR 99


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 210 VANCASTMYAVCIMYPIRCHPTPPSCQNPEK 302
           + +C+ T  + CI   +R HP  P+C+ PE+
Sbjct: 41  ITSCSHTFCSFCIRDYLREHPMCPACRAPEQ 71


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 498 TGSHLILIILDDKGVLCRKVNAVLE 572
           T +HL+L+ L DKGV   +V  +LE
Sbjct: 345 TDTHLVLVDLTDKGVDGARVERILE 369


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -2

Query: 476 LCLF-RFLFQKLFNGRHAPRIRCAFRFPATRTFGF 375
           +CL  RFLF K FN     R++  F   +   F F
Sbjct: 73  VCLMKRFLFNKFFNRHPFTRVKSCFSSSSPSKFSF 107


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +3

Query: 249 MYPIRCHPTPP--SCQNP---EKCLKKTTSKGVRPCRSAVSIMST 368
           +YP R  PTPP  S  +P    + +K TTS   R     VS  ST
Sbjct: 251 LYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASRQPSPLVSSKST 295


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 457 FFKNFSTAATLLGFDALFD 401
           FFK+  T+A  L FD+LF+
Sbjct: 139 FFKSLQTSAVNLEFDSLFE 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,822
Number of Sequences: 5004
Number of extensions: 48528
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)