Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0100
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)                29   4.3  
SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043)               28   7.5  
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   28   7.5  
SB_29220| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)                 27   9.9  
SB_48838| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)                 27   9.9  
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_14348| Best HMM Match : PIG-U (HMM E-Value=6.7e-06)                 27   9.9  

>SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)
          Length = 923

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 494 TDWQPSYLNYTRRQGSTLSKSE 559
           TDWQ ++ NY R    T+ K+E
Sbjct: 43  TDWQTTFRNYDRDSSGTIDKNE 64


>SB_7305| Best HMM Match : Extensin_2 (HMM E-Value=0.043)
          Length = 908

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -3

Query: 187 LVHVMLAYRKGPRYSADFRILHH----RYKF*GKS*IVTIVSFPRSFFFQNIFSDIFYVT 20
           L+H  + + + P Y++ FR L H     Y    K+ +   +S PR+ ++ ++F  + Y+T
Sbjct: 702 LLHFAIPHPQIPHYTSLFRTLKHPTTFPYSGPSKTSLHFAISDPRTPYYTSLFHTLKYLT 761

Query: 19  LKIY 8
              Y
Sbjct: 762 TLRY 765


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -3

Query: 187 LVHVMLAYRKGPRYSADFRILHH----RYKF*GKS*IVTIVSFPRSFFFQNIFSDIFYVT 20
           L+H  + + + P Y++ FR L H     Y    K+ +   +S PR+ ++ ++F  + Y+T
Sbjct: 651 LLHFAIPHPQIPHYTSLFRTLKHPTTFPYSGPSKTSLHFAISDPRTPYYTSLFHTLKYLT 710

Query: 19  LKIY 8
              Y
Sbjct: 711 TLRY 714


>SB_29220| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)
          Length = 256

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 514 IRWLPVSLSFFRIFASLDFFFKNFSTAATL 425
           + W+P +   + +  SLDF F NFS   TL
Sbjct: 151 VTWMPYNC--YWVICSLDFSFLNFSVTTTL 178


>SB_48838| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)
          Length = 556

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 514 IRWLPVSLSFFRIFASLDFFFKNFSTAATL 425
           + W+P +   + +  SLDF F NFS   TL
Sbjct: 457 VTWMPYNC--YWVICSLDFSFLNFSVTTTL 484


>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2973

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +1

Query: 226  PPCTPSASCTPYGVTLHRLHAKIQKNA*RKQLRKEFDLVGVLYP*CQQGQKP 381
            P    SA  TP G++LHR  A++ K A R+ L  +      L P      KP
Sbjct: 1375 PGSDRSACQTPQGLSLHRSSAQVGKLAARRGLHTDTPSSDYLRPLLGADTKP 1426


>SB_14348| Best HMM Match : PIG-U (HMM E-Value=6.7e-06)
          Length = 84

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 319 LRKEFDLVGVLYP*CQQGQKPNVL 390
           LR+E+DLV  +YP    G+  NV+
Sbjct: 59  LRREYDLVSGIYPKVMDGEPANVV 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,399,763
Number of Sequences: 59808
Number of extensions: 362314
Number of successful extensions: 810
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)