Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0099
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 158 6e-40
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 83 5e-17
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 82 9e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 58 1e-09
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 31 0.22
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 29 0.67
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 28 1.2
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 27 2.0
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 25 8.2
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.2
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 158 bits (384), Expect = 6e-40
Identities = 69/111 (62%), Positives = 90/111 (81%)
Frame = +1
Query: 256 RGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTXIQTI 435
RG++SMKEVDEQ+ ++Q KNS YFVEWIP+N AVC +PP+ LKM++TFIGN+T IQ I
Sbjct: 318 RGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEI 377
Query: 436 FKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQYQDA 588
F+R+ +QF AM + ++FLHWYTGE + +AESNMNDL+SEYQQYQ+A
Sbjct: 378 FRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEA 428
Score = 141 bits (342), Expect = 8e-35
Identities = 65/106 (61%), Positives = 82/106 (77%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
M+G+TT RFPG+LN+DLRKLAVNMVPFPRLHF+ GFAPL + G+ ++A++VPELT Q
Sbjct: 233 MAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQ 292
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTKTA 319
MFDA NMMVA DPRHGRYLTVA + G+ K++ R +TK +
Sbjct: 293 MFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNS 338
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 82.6 bits (195), Expect = 5e-17
Identities = 37/90 (41%), Positives = 53/90 (58%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
+S IT LRF G LN DL + N+VP+PR+HF +AP+ S + + +V E+T Q
Sbjct: 235 VSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQ 294
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGECL 271
F+ N MV CDPR GRY+ + G+ +
Sbjct: 295 CFEPYNQMVKCDPRAGRYMATCLLYRGDVI 324
Score = 62.5 bits (145), Expect = 6e-11
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Frame = +1
Query: 256 RGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLK--------MASTFIG 411
RG + ++V + I+ K + FV+W P KI +CD PP+ ++ A +
Sbjct: 320 RGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLS 379
Query: 412 NTTXIQTIFKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQ 576
NTT I + R+ +F M +F+HWY GE + +A ++ L +Y++
Sbjct: 380 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 81.8 bits (193), Expect = 9e-17
Identities = 36/90 (40%), Positives = 53/90 (58%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 181
+S IT LRF G LN DL + N+VP+PR+HF ++P+ S + + +V E+T Q
Sbjct: 239 VSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQ 298
Query: 182 MFDAKNMMVACDPRHGRYLTVATISGGECL 271
F+ N MV CDPR GRY+ + G+ +
Sbjct: 299 CFEPYNQMVKCDPRTGRYMATCLLYRGDVI 328
Score = 58.4 bits (135), Expect = 1e-09
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Frame = +1
Query: 256 RGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGL--------KMASTFIG 411
RG + ++V + +I+++ + FV+W P KI +C PP+ + A +
Sbjct: 324 RGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLS 383
Query: 412 NTTXIQTIFKRVSEQFVAMXKAESFLHWYTGEVWMKWSSRKAESNMNDLISEYQQ 576
NTT I + R+ +F M +F+HWY GE + +A ++ L +Y++
Sbjct: 384 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 58.0 bits (134), Expect = 1e-09
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Frame = +2
Query: 2 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRAL---TVPEL 172
MS TT LR+PG +N DL + +++P PR HF + P T++ ++ +A+ TV ++
Sbjct: 236 MSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDV 295
Query: 173 TLQMFDAKNMMVACDP-RHGRYLTVATISGGE 265
++ KN MV+ +P + ++++ I GE
Sbjct: 296 MRRLLLPKNQMVSVNPSKKSCFISILDIIQGE 327
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 30.7 bits (66), Expect = 0.22
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 299 FASCSSTSFIDIRPLISSQRSNTSRVEDHTRPSCFWRRTFAASARVQL 156
F+ C T I P++ N + + D ++ FW++ F ASA V L
Sbjct: 25 FSKCHRTVTTKILPIVEKYAKNCNTIWDSSK---FWKQFFEASANVSL 69
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 29.1 bits (62), Expect = 0.67
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 104 TPGFAPLTSRGAQQYRALTVPELTLQMFDAKNMMVACDPRHGRYLTVATISGGECL 271
TP A ++ Y A+++ +L + M + +GRYL SGG C+
Sbjct: 446 TPILAVASNSIVSMYNAISLQQLAVFMRHTAPVSALSFSHNGRYLATGDTSGGVCI 501
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 148 SSFNCTRADAANVRRQKHDGRV*SSTREVFDRCDDIRGRMSMKEVDEQLANIQNK 312
S+ N R D + + + STR DR D G S++E+D+Q +N+
Sbjct: 253 SANNSMRDDKKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEEIDKQRKEFENR 307
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 293 WRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLRPSLVTRRXYRPYSRGCL---SSSW 463
+R+ K+ ++++ GYP R+P V L+ +L+ LV + PY+ + S +W
Sbjct: 208 FRLRSQKSDKVMNKGYPFGYRIPSVGQLQLILRQTN-GLVIKVFLVPYNVSSMVDCSKTW 266
Query: 464 L 466
+
Sbjct: 267 I 267
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 377 GGMSHTAILQLLGIHSTKYVLFLF*IFASCSSTSFIDIRPLISSQRSNTSRV 222
GG ILQ +G +S Y +LF ++ S S ++ +I+ +T+RV
Sbjct: 74 GGQDKCGILQEVGTNSPSY--YLFGHESNICSASALNSETIITGSWDSTARV 123
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 426 YXRRVTNEGRSHFKTPRRYVTHGN 355
+ RR NE R++ +PR + THGN
Sbjct: 254 FRRREDNE-RNNSNSPRNFSTHGN 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,776
Number of Sequences: 5004
Number of extensions: 57912
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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