Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0092
(593 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447 30 1.6
08_01_0764 - 7332969-7333870,7334044-7334369,7334712-7335384,733... 29 2.8
03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485... 29 3.7
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 28 4.9
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 28 4.9
04_01_0222 - 2805329-2805780,2805866-2806611,2806730-2806778,280... 28 4.9
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715... 28 6.5
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 27 8.5
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 27 8.5
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 27 8.5
>05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447
Length = 607
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 125 FCKMTSCCTCEGHHSGAKSSLPLVCXVPRD 214
FCK SCC C SL LVC D
Sbjct: 68 FCKRCSCCICHQFDDNKDPSLWLVCASEND 97
>08_01_0764 -
7332969-7333870,7334044-7334369,7334712-7335384,
7336195-7336219
Length = 641
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 125 FCKMTSCCTCEGHHSGAKSSLPLVC 199
+CK SCC C + SL LVC
Sbjct: 155 YCKRCSCCICHKYDENKDPSLWLVC 179
>03_03_0206 +
15447054-15447181,15448243-15448298,15448373-15448515,
15448630-15448827,15448901-15449100,15449585-15449684,
15449769-15450350,15450434-15450556,15451028-15451108,
15451188-15451495,15451577-15451816,15452261-15452345,
15452429-15452606,15453053-15453227,15453826-15453982
Length = 917
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 431 PTNIGRLLGSRRINICAERFPIY 499
PT++GRL R+N+C+E IY
Sbjct: 32 PTDVGRLACVSRLNLCSENDEIY 54
>12_02_0616 -
21246374-21246462,21246605-21247702,21247800-21248110,
21248550-21249251,21252802-21252912,21253396-21253481,
21253753-21253862,21254085-21254236,21254656-21254765
Length = 922
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 125 FCKMTSCCTCEGHHSGAKSSLPLVC 199
FCK SCC C SL LVC
Sbjct: 347 FCKRCSCCICHLFDDNKDPSLWLVC 371
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -3
Query: 297 LVEQLEIILSCGPSYAGRGFVLASEDAPSRGTXQTSGRLDLA 172
L+ Q + I + G S AG+G LA E SRG+ R D A
Sbjct: 272 LLAQQQNIATPGVSSAGKGKRLADEAGTSRGSASKKSRSDSA 313
>04_01_0222 -
2805329-2805780,2805866-2806611,2806730-2806778,
2807031-2807748,2808513-2808824
Length = 758
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -3
Query: 297 LVEQLEIILSCGPSYAGRGFVLASEDAPSRGTXQTSGRLDLA 172
L+ Q + I + G S AG+G LA E SRG+ R D A
Sbjct: 161 LLAQQQNIATPGVSSAGKGKRLADEAGTSRGSASKKSRSDSA 202
>06_03_0151 + 17270688-17270698,17271149-17271281,17271548-17271589,
17271706-17271815,17271957-17272035,17272114-17272287,
17272386-17272466,17272761-17272988,17273067-17273402,
17273501-17273586,17273642-17273783,17274596-17274687,
17274770-17274904,17275142-17275304,17275393-17275482,
17275568-17275753,17276109-17276141,17276700-17276762,
17276839-17276901,17276983-17277042,17277258-17277410,
17277530-17277613,17278434-17278610,17278685-17278791,
17278858-17279071,17279158-17279261,17279926-17280061,
17280191-17280316,17280682-17280792,17280968-17281066,
17281367-17281633,17281707-17281822,17281853-17282084,
17282597-17282664,17282682-17282807,17282980-17283040
Length = 1495
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 184 SAAGLPGSSRWSIFGSQDKAPACIAGPTTQNDFQLLD 294
+ AGL SS ++FG K AC + P + D +LD
Sbjct: 1327 AGAGLYDSSLKNLFGITTKLTACFSVPMDEEDEVILD 1363
>07_03_1774 +
29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 84 LFCLCFYHFFVCFNLFKFCTKN 19
LF LCF+ F + FN TKN
Sbjct: 97 LFVLCFFLFQIAFNCLLITTKN 118
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +1
Query: 226 GSQDKAPACIAGPTTQNDFQLLDEEYIRETLSCHRGRCIWT 348
G+QDK AC L E Y + C G CI T
Sbjct: 100 GTQDKCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILT 140
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +1
Query: 226 GSQDKAPACIAGPTTQNDFQLLDEEYIRETLSCHRGRCIWT 348
G+QDK AC L E Y + C G CI T
Sbjct: 101 GTQDKCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILT 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,482,477
Number of Sequences: 37544
Number of extensions: 331632
Number of successful extensions: 703
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -