Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0091
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch... 29 0.45
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 1.8
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 27 2.4
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 3.2
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 25 5.6
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 7.3
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 25 7.3
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 25 7.3
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 9.7
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 9.7
>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 372
Score = 29.1 bits (62), Expect = 0.45
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 95 VQTTVKKIHAYSHHLFALRTL 157
++ VKKIH ++H +F LRTL
Sbjct: 63 LKVAVKKIHPFNHPVFCLRTL 83
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/71 (21%), Positives = 31/71 (43%)
Frame = +2
Query: 26 MKTLIFIMLVACVASQRTVLWYVVQTTVKKIHAYSHHLFALRTLSIAPDTLESVLVVPLV 205
+ TL+ ++ V S V W ++ T +H+Y+ ++ L I + V+ +
Sbjct: 107 LSTLLQKFPLSKVTSAFIVAWGILMTLTCLVHSYASYIATRTLLGILESVITPAFVLFIA 166
Query: 206 SFYLVKVQLAR 238
+Y + Q R
Sbjct: 167 QWYRKEEQFFR 177
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Frame = +2
Query: 74 RTVLWYVVQTTV-----KKIHAYSHHLFAL 148
R + WY + TT+ + I+AY HHLF +
Sbjct: 109 RFINWYFLMTTLYYAYGESIYAYFHHLFIM 138
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 38 IFIMLVACVASQRTVLWYVVQTTVKK--IHAYSHHLFAL 148
+F M ACV T LW + T++K IHA S F +
Sbjct: 158 LFYMCRACVIYPITPLWDAKERTMRKATIHALSRIFFLI 196
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 124 IQPPLVCPKNTEHRARHAGKCACCPACVXLLGEG 225
+ PPL PK+ HR AG+ + LL +G
Sbjct: 334 LDPPLD-PKSFSHRCGRAGRAGRAGVAIVLLNDG 366
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 952
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -2
Query: 244 NKSCKLHLHQVKXHKRDNKHTFQRVWRD 161
N KLH ++ R+ +HT Q+ + D
Sbjct: 924 NSELKLHCFELSERLREREHTLQQTFGD 951
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 283 SLHTAEGVSPVPSNKSCKLHLHQVKXHKRDNKHTFQRVWR 164
+L TAEGV P+ + L + + +N H + R+W+
Sbjct: 61 NLETAEGVYRDPTINEGEEELVTWELNDPENPHNWSRLWK 100
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -2
Query: 259 SPVPSN--KSCKLHLHQ-VKXHKRDNKHTFQRVWRDAQ 155
SP+ N +S +LH+ + K +N H FQ W+ Q
Sbjct: 54 SPIDENYPRSVAKYLHEALYRQKGENNHDFQDAWKAYQ 91
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 167 ARCSVFLGQTSGGCMHGFFSQ*SVPHTKAPY 75
ARC F+ Q SGG + GF + + + K Y
Sbjct: 161 ARCFDFVLQKSGGNILGFLGKARILYAKGNY 191
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 41 FIMLVACVASQRTVLWYVV 97
FI+LV C+AS + W V+
Sbjct: 470 FIILVVCIASLYSAFWPVI 488
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,225
Number of Sequences: 5004
Number of extensions: 41447
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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