Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0091
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0522 - 3834551-3835451,3835992-3836572                           31   0.46 
04_01_0271 + 3612066-3614056,3614666-3614780                           30   1.1  
03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395           29   3.2  
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948...    28   5.6  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    28   5.6  
11_01_0370 + 2814888-2814979,2815450-2815620,2815753-2815834,281...    27   7.5  
08_01_0267 - 2153421-2153759,2153895-2154098,2154358-2154429,215...    27   7.5  
04_01_0266 - 3563075-3563109,3563405-3564754,3564862-3564965,356...    27   9.9  

>01_01_0522 - 3834551-3835451,3835992-3836572
          Length = 493

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 118 PCIQPPLVCPKNTEHRARHAGKCACCPACVXLLGEG-ATCKIYSKELAKPPPLCVRSLSN 294
           P IQP L C     H+  HA +CA   A     G+G    +    E A+P  + V  ++ 
Sbjct: 271 PTIQPVLSCIFRGVHKCHHAKECAGGGAAAGNNGDGDGNDEEAETETAEPEVVVVEPVAA 330

Query: 295 ASKXF 309
            SK F
Sbjct: 331 RSKSF 335


>04_01_0271 + 3612066-3614056,3614666-3614780
          Length = 701

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 54  WHALRHSVRCFGMWYRL 104
           W +LRH+V C G W+RL
Sbjct: 341 WSSLRHAVLCAGRWHRL 357


>03_02_0224 + 6557284-6558052,6559057-6559131,6560125-6561395
          Length = 704

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 222 RCNLQDLFEGTGETPSAVCKEPLKC 296
           RC  Q+ FEG G T  A C+   KC
Sbjct: 236 RCECQEGFEGDGYTAGAGCRRVPKC 260


>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
            14794906-14794986,14795078-14795147,14795267-14795337,
            14795427-14795594,14796030-14796074,14796449-14796511,
            14796594-14796869,14797858-14797971,14798099-14798225,
            14798315-14798484,14798743-14798841,14799577-14799630,
            14801487-14801522,14801741-14801844,14801952-14802186,
            14802377-14802609,14802846-14803346,14803422-14803716,
            14805796-14805881,14806952-14807064,14807303-14807385,
            14808014-14808866,14809215-14809364,14809963-14811146
          Length = 1854

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
 Frame = +1

Query: 25   NENVDFYNAGGM--RCVTAYGALVCGTDYC-EKNPCIQPPLVCPKNTEHRARHAGKCACC 195
            +E VD  N  G    C   Y      TD C + N C Q    CPK    R         C
Sbjct: 1380 SECVDSINGPGYLCNCTLGYHGNPYITDGCIDVNECEQNQSPCPKGATCRNTEGWYHCSC 1439

Query: 196  PACVXLLGEGATC 234
            P    L  E  TC
Sbjct: 1440 PVGRKLAKETNTC 1452


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 136 LVCPKNTEHRARHAGKCACCP 198
           L C K++  R  HAGKC  CP
Sbjct: 313 LQCGKHSCERGCHAGKCGGCP 333


>11_01_0370 +
           2814888-2814979,2815450-2815620,2815753-2815834,
           2816275-2816316,2816397-2816456,2816817-2816913,
           2817382-2819024,2819155-2819256,2819369-2819509,
           2819625-2819750,2819935-2820096
          Length = 905

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 178 QRVWRDAQCS*GKQVVAVCMDFFHSSLYHIPKHRTL*RNACHQHY 44
           Q+V+RD Q     Q +A+  D   SSL  + K   L  N     Y
Sbjct: 269 QQVYRDGQLGSNAQSIAMSSDLISSSLRSVQKQPLLMNNISQLEY 313


>08_01_0267 -
           2153421-2153759,2153895-2154098,2154358-2154429,
           2154514-2154599,2154704-2154830,2154899-2155052,
           2156129-2156451
          Length = 434

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 211 LLGEGATCKIYSKELAKPPPLCVRSLSNASK 303
           LLG+GA   +Y  +L+    L V+ L+N SK
Sbjct: 120 LLGQGAFGPVYKADLSSGETLAVKVLANNSK 150


>04_01_0266 -
           3563075-3563109,3563405-3564754,3564862-3564965,
           3564967-3565421
          Length = 647

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 54  WHALRHSVRCFGMWYRL 104
           W  LRH+  C G W+RL
Sbjct: 301 WSWLRHAALCTGRWHRL 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,290,606
Number of Sequences: 37544
Number of extensions: 280085
Number of successful extensions: 711
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)