Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0091
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92833-7|CAB07381.1|  825|Caenorhabditis elegans Hypothetical pr...    31   0.55 
Z92833-6|CAB07380.1|  823|Caenorhabditis elegans Hypothetical pr...    31   0.55 
AL023842-9|CAA19521.1|  825|Caenorhabditis elegans Hypothetical ...    31   0.55 
AL023842-8|CAA19520.1|  823|Caenorhabditis elegans Hypothetical ...    31   0.55 
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    30   0.95 
Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical pr...    30   0.95 
Z81544-9|CAI79252.1|  231|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    28   5.1  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       27   6.7  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       27   6.7  
X53314-1|CAA37396.1|  294|Caenorhabditis elegans deg-1 product p...    27   8.9  
U67951-5|AAB07574.2|  778|Caenorhabditis elegans Degeneration of...    27   8.9  
L34414-1|AAA99524.1|  778|Caenorhabditis elegans degenerin protein.    27   8.9  
AF016442-3|AAB65917.2|  597|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z92833-7|CAB07381.1|  825|Caenorhabditis elegans Hypothetical
           protein F38A6.3b protein.
          Length = 825

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 331 NDYTXLVQTLLMHLRGSLHTAEGVSPVPSNKSCKLHLHQVKXHKRDNKHTFQR 173
           N Y+  V TL+ HL+ + H  E     P++ S KLHL  +K      ++  +R
Sbjct: 65  NSYSSKV-TLIAHLKVARHYGEVAPITPTSASLKLHLFTIKMEDNRKRNMERR 116


>Z92833-6|CAB07380.1|  823|Caenorhabditis elegans Hypothetical
           protein F38A6.3a protein.
          Length = 823

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 331 NDYTXLVQTLLMHLRGSLHTAEGVSPVPSNKSCKLHLHQVKXHKRDNKHTFQR 173
           N Y+  V TL+ HL+ + H  E     P++ S KLHL  +K      ++  +R
Sbjct: 65  NSYSSKV-TLIAHLKVARHYGEVAPITPTSASLKLHLFTIKMEDNRKRNMERR 116


>AL023842-9|CAA19521.1|  825|Caenorhabditis elegans Hypothetical
           protein F38A6.3b protein.
          Length = 825

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 331 NDYTXLVQTLLMHLRGSLHTAEGVSPVPSNKSCKLHLHQVKXHKRDNKHTFQR 173
           N Y+  V TL+ HL+ + H  E     P++ S KLHL  +K      ++  +R
Sbjct: 65  NSYSSKV-TLIAHLKVARHYGEVAPITPTSASLKLHLFTIKMEDNRKRNMERR 116


>AL023842-8|CAA19520.1|  823|Caenorhabditis elegans Hypothetical
           protein F38A6.3a protein.
          Length = 823

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 331 NDYTXLVQTLLMHLRGSLHTAEGVSPVPSNKSCKLHLHQVKXHKRDNKHTFQR 173
           N Y+  V TL+ HL+ + H  E     P++ S KLHL  +K      ++  +R
Sbjct: 65  NSYSSKV-TLIAHLKVARHYGEVAPITPTSASLKLHLFTIKMEDNRKRNMERR 116


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 148 KNTEHRARHAGKCACCPACVXLLGEGATCKIYSK-ELAKPPP 270
           K T HR +H    ACCP C  ++   A      +    KPPP
Sbjct: 147 KGTWHRVKHVVFVACCPPCCCIIQRSAFWPPRREYYFFKPPP 188


>Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical
           protein C46C2.6a protein.
          Length = 195

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 142 CPKNTEHRARHAGKCACCPACVXLLGEGATC-KIYSKELAK 261
           CP + +   +H+G+CA   AC+     G  C K++S ++ K
Sbjct: 60  CPSDYDFIRQHSGRCADGTACIPDSSFGEPCIKLFSYQMTK 100


>Z81544-9|CAI79252.1|  231|Caenorhabditis elegans Hypothetical
           protein F49C5.10 protein.
          Length = 231

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 31  NVDFYNAGGMRCVTAYGALVCGTD-YCEKNPCIQPPLVCPKNTEHRARHAGKCAC 192
           ++ F N  G + V     ++     Y   N    PPL+C + T ++ R+    AC
Sbjct: 13  SIPFTNGNGCQVVNKASTMIGKLQLYFNFNKIWNPPLICNRGTNYKCRNRDCTAC 67


>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
            protein Y76B12C.7 protein.
          Length = 1454

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +2

Query: 50   LVACVASQRTVLWYVVQTTVKKI-----HAYSHHLFALRTLSIAPDTLESVLVV 196
            L+ C   Q+  +W      +  I     H Y + L +LRT++IA D  ES+ ++
Sbjct: 1187 LLLCGMGQKVFIWQFKDNDLMGISFLDMHYYVYQLHSLRTIAIACDARESMSLI 1240


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 16  KFQNENVDFYNAGGMRCVTAYGALVCGTDYCEKNPCI 126
           K+ +++VD        C   +G   C    CE NPC+
Sbjct: 609 KYNDDDVDEKPTFECFCAAGFGGPKCDQRPCESNPCL 645


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 16  KFQNENVDFYNAGGMRCVTAYGALVCGTDYCEKNPCI 126
           K+ +++VD        C   +G   C    CE NPC+
Sbjct: 609 KYNDDDVDEKPTFECFCAAGFGRPKCDQRPCESNPCL 645


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 16  KFQNENVDFYNAGGMRCVTAYGALVCGTDYCEKNPCI 126
           K+ +++VD        C   +G   C    CE NPC+
Sbjct: 609 KYNDDDVDEKPTFECFCAAGFGRPKCDQRPCESNPCL 645


>X53314-1|CAA37396.1|  294|Caenorhabditis elegans deg-1 product
           protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/68 (22%), Positives = 25/68 (36%)
 Frame = +1

Query: 19  FQNENVDFYNAGGMRCVTAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKCACCP 198
           FQN  +D  + G  R     G   C         C++  +    +  H  +   KC C  
Sbjct: 94  FQNGLIDDCSCGDPRFPVPEGYRHCSAFNATARTCLEKNIGSVGDFHHITQKMDKCVCKQ 153

Query: 199 ACVXLLGE 222
           +C  ++ E
Sbjct: 154 SCEEIIHE 161


>U67951-5|AAB07574.2|  778|Caenorhabditis elegans Degeneration of
           certain neuronsprotein 1 protein.
          Length = 778

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/68 (22%), Positives = 25/68 (36%)
 Frame = +1

Query: 19  FQNENVDFYNAGGMRCVTAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKCACCP 198
           FQN  +D  + G  R     G   C         C++  +    +  H  +   KC C  
Sbjct: 578 FQNGLIDDCSCGDPRFPVPEGYRHCSAFNATARTCLEKNIGSVGDFHHITQKMDKCVCKQ 637

Query: 199 ACVXLLGE 222
           +C  ++ E
Sbjct: 638 SCEEIIHE 645


>L34414-1|AAA99524.1|  778|Caenorhabditis elegans degenerin protein.
          Length = 778

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/68 (22%), Positives = 25/68 (36%)
 Frame = +1

Query: 19  FQNENVDFYNAGGMRCVTAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKCACCP 198
           FQN  +D  + G  R     G   C         C++  +    +  H  +   KC C  
Sbjct: 578 FQNGLIDDCSCGDPRFPVPEGYRHCSAFNATARTCLEKNIGSVGDFHHITQKMDKCVCKQ 637

Query: 199 ACVXLLGE 222
           +C  ++ E
Sbjct: 638 SCEEIIHE 645


>AF016442-3|AAB65917.2|  597|Caenorhabditis elegans Hypothetical
           protein K12B6.2 protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 86  WYVVQTTVKKI-HAYSHHLFALRTLSIAPDTLESVLVVPLVSFYLVKVQLARFIRR 250
           W+++  TV ++    S+    L+ L+   D L   LV+PL+  +L +V  +  IRR
Sbjct: 463 WFILALTVLEVDQTLSNEHCLLKPLAPNTDILIYWLVIPLLLSFLFQVVFSFAIRR 518


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,543,552
Number of Sequences: 27780
Number of extensions: 253370
Number of successful extensions: 641
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)