Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0091
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.0  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   6.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.2  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +2

Query: 8   VFKNFKMKTLIFIMLVACVASQRTVLWYVVQ 100
           +FK FK +  +++++ AC+  +   LW V++
Sbjct: 431 LFKTFKDRKYLYMLMEACLGGE---LWTVLR 458


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 226 HLHQVKXHKRDNKHTFQRVWRDAQ 155
           ++ +VK  K  +KH  Q  W D +
Sbjct: 325 YIPKVKNKKAGSKHLLQNTWLDPE 348


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +1

Query: 145 PKNTEHRARHAGKCACCPACVXLLGEGATCKIYSKELAKPPPL 273
           P N    A  A KCA       L  E A C+   K ++  P L
Sbjct: 153 PMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVISISPDL 195


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 163 RARHAGKCACCPACVXLLGEGAT 231
           + RH     CC  C  L G G++
Sbjct: 3   KGRHVVMSCCCWCCDNLGGPGSS 25


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 206 SFYLVKVQLARFIRRNWRNPLRCV 277
           ++ L + +L    +  WRN  RC+
Sbjct: 104 TYQLTETELVFGAKLAWRNATRCI 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,722
Number of Sequences: 438
Number of extensions: 3003
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)