Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0091
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin ...    30   1.2  
At3g11810.1 68416.m01447 expressed protein                             28   4.7  
At2g31440.1 68415.m03841 expressed protein identical to cDNA end...    28   4.7  
At5g39865.1 68418.m04835 glutaredoxin family protein                   27   8.3  

>At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin
           family protein low similarity to Ser/Thr protein kinase
           [Zea mays] GI:2598067; contains Pfam profile PF01453:
           Lectin (probable mannose binding)
          Length = 443

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 178 GKCACCPACVXLLGEGATCKIYSKELAKP 264
           G+C  CP+ + LLG   TCKI S     P
Sbjct: 330 GQCNACPSDIGLLGWDETCKIPSLASCDP 358


>At3g11810.1 68416.m01447 expressed protein 
          Length = 348

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 83  LWYVVQTTVKKIHAYSHHLFALRTLSIAPDTLESVLVVPLVSFYLVKVQ 229
           LW ++  + + I+A+S H  AL  L + P    S+ V P V F L+  Q
Sbjct: 15  LWIILSESKRIINAHSRHFLALSVLFLLP-LCFSITVYPSV-FLLITDQ 61


>At2g31440.1 68415.m03841 expressed protein identical to cDNA
           endonuclease III homologue (nth1 gene) GI:11181951
          Length = 250

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 150 LRANKWWLYAWIFFTVVC 97
           L+AN WW YA +  T VC
Sbjct: 59  LKANVWWPYALLVITSVC 76


>At5g39865.1 68418.m04835 glutaredoxin family protein
          Length = 390

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 265 GVSPVPSNKSCKLHLHQVKXHKRDNKHT 182
           G+SPV   +S  +H+H    H  D+ HT
Sbjct: 18  GLSPVIVPRSYSMHVHHPAQHTGDSYHT 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,446,703
Number of Sequences: 28952
Number of extensions: 219675
Number of successful extensions: 536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)