Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0086
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    27   0.099
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.70 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.70 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   0.93 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.6  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 0.099
 Identities = 17/74 (22%), Positives = 29/74 (39%)
 Frame = -1

Query: 541 LLPENELAENPQTIAAFCFFSNYIQYRINQFSPLCVMSFRPVIPRPRLSEDEVVRSEDLP 362
           L P++ +  NPQ            Q+     SP+   S+ P  P  ++  DE+ +   L 
Sbjct: 103 LQPQHVVYGNPQQQQLAAETQQQQQHNNGYASPMSTSSYDPYSPNSKIGRDELSQPGSLN 162

Query: 361 KRPGTDGVHGSRLK 320
               +DG    + K
Sbjct: 163 GYGSSDGCDARKKK 176


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -3

Query: 389 RSCPVGRFAQTARNGRSPWFQAQGPPSQLAGRTCPLK 279
           ++CP   +   A+ G  P     GP ++L G    L+
Sbjct: 262 QACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVLALE 298


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -3

Query: 389 RSCPVGRFAQTARNGRSPWFQAQGPPSQLAGRTCPLK 279
           ++CP   +   A+ G  P     GP ++L G    L+
Sbjct: 262 QACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVLALE 298


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 364 PKRPGTDGVHGSRLKVHH 311
           P+ PGT  ++ ++LK HH
Sbjct: 139 PREPGTPRINFTKLKRHH 156


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 455 VDSVLDVVRKEAEGCDCL 508
           +DS+++++R   + CD L
Sbjct: 106 IDSIINIIRVRVDACDRL 123


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 43  FFLHDQILESVYL 81
           FFLH Q+L   YL
Sbjct: 259 FFLHKQVLNRYYL 271


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 43  FFLHDQILESVYL 81
           FFLH Q+L   YL
Sbjct: 259 FFLHKQVLNRYYL 271


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -3

Query: 461 NQPVQPPLCNVLSPSYSPPQTVRRRSCPVGRFAQTARNGRSP 336
           ++PV+PP      P +  P+  + +S P     +   N  SP
Sbjct: 335 SEPVEPPRRKNNCPLHCKPELGQSQSSPKFVARREESNSSSP 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,012
Number of Sequences: 438
Number of extensions: 3856
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)